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rs5743836 — TLR9 Promoter -1237T/C
Chromosome 3 Risk Allele G Category Innate Immunity & Infection Defense Innate Immunity, Infectious Disease, Immune & Gut, Inflammation, Autoimmune, Immune System

TLR9 promoter variant that creates an IL-6-responsive element and estrogen-sensitive transcription site, amplifying innate immune signaling and increasing lymphoma susceptibility while modulating malaria, HCV, and thrombosis outcomes

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rs6564851 — BCO1
Chromosome 16 Risk Allele G Category Vitamins & Nutrient Absorption Vitamin A, Beta-Carotene, Diet, Eye Health

Upstream regulatory variant that reduces BCO1 (BCMO1) catalytic activity by ~48%, independently limiting beta-carotene to vitamin A conversion; the top GWAS hit for circulating beta-carotene levels

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rs753085 — COL27A1
Chromosome 9 Risk Allele A Category Coronary Artery Disease & Atherosclerosis Collagen, Connective Tissue, Cardiovascular, Extracellular Matrix, Bone & Joint

Intronic variant in COL27A1 (collagen type XXVII alpha-1) associated with altered connective tissue integrity and elevated varicose vein risk.

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rs806368 — CNR1
Chromosome 6 Risk Allele T Category Mood & Behavior Addiction, Neurotransmitters, Brain Health, Endocannabinoid, Dopamine, Cannabis

3'UTR variant in the cannabinoid receptor 1 gene that regulates CB1 expression in the brain and modulates vulnerability to cannabis, alcohol, nicotine, and cocaine dependence, as well as impulsivity and emotional reactivity

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rs9594759 — TNFSF11
Chromosome 13 Risk Allele T Category Fitness & Body Bone & Joint, Cardiovascular, Calcium, Vitamin D

Regulatory variant in the RANKL gene affecting bone mineral density and osteoporotic fracture risk

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rs17857135 — RNF213 Met270Thr
Chromosome 17 Risk Allele C Category Neurology & Cognition Migraine, Neurological Risk, Brain Health, Cardiovascular, Angiogenesis, Cerebrovascular

Missense variant (Met270Thr) in RNF213, the major moyamoya disease susceptibility gene; the C allele reached genome-wide significance for migraine risk (OR=1.06), linking vascular remodeling genetics to common headache disorders

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rs1950897 — RAD51B RAD51B Intronic RA Susceptibility Variant
Chromosome 14 Risk Allele T Category Allergy & Atopic Disease Rheumatoid Arthritis, Autoimmune, Inflammation, DNA Repair, Double-Strand Break Repair, Immune & Autoimmune

Intronic variant in RAD51B on chromosome 14; the T allele is associated with increased rheumatoid arthritis risk (OR ~1.10 per allele) in trans-ethnic GWAS, likely through effects on lymphocyte genomic stability and immune cell development mediated by RAD51B's role in homologous recombination DNA repair

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rs202676 — FOLH1 T484A
Chromosome 11 Risk Allele G Category Methylation & Detox Methylation, Folate, B Vitamins, Homocysteine, Cognition

Reduces intestinal folate hydrolase activity, impairing absorption of dietary polyglutamyl folates and lowering circulating folate available for methylation

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rs2289669 — SLC47A1 MATE1 G-1853A
Chromosome 17 Risk Allele A Category Pharmacogenomics Drug Metabolism, Pharmacogenomics, Diabetes, Metformin

Intronic variant in MATE1, the renal and hepatic metformin efflux transporter; the A allele reduces tubular secretion, prolongs metformin retention, and enhances glucose-lowering response in type 2 diabetes

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rs350845 — SIRT6
Chromosome 19 Risk Allele G Category Longevity & Aging Longevity, Aging, Telomere Biology, DNA Repair, Inflammation

Intronic eQTL in SIRT6 where the rare A allele upregulates SIRT6 expression across 18 tissue types and is enriched in Ashkenazi Jewish centenarians, linking higher SIRT6 activity to improved genomic stability and longevity

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