Research

rs104894503 — TPM1 D175N (Asp175Asn)

Pathogenic alpha-tropomyosin missense variant that increases thin filament calcium sensitivity, causing familial hypertrophic cardiomyopathy; a founder mutation accounting for ~6.5% of HCM cases in Finland

Established Pathogenic Share

Details

Gene
TPM1
Chromosome
15
Risk allele
A
Clinical
Pathogenic
Evidence
Established

Population Frequency

AA
0%
AG
0%
GG
100%

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TPM1 D175N — When the Cardiac Contraction Switch Stays Open

The heart's ability to pump depends on a precisely timed molecular switch inside every muscle fiber. Tropomyosin11 Tropomyosin
A coiled-coil protein that winds along actin filaments in the sarcomere, blocking or exposing myosin binding sites in response to calcium signals
sits at the center of this switch. In the resting heart, tropomyosin physically blocks myosin from grabbing actin. When calcium floods in during a heartbeat, tropomyosin pivots, exposing binding sites and triggering contraction. The TPM1 D175N variant — a single amino acid swap at position 175 of the alpha-1 chain — shifts this pivot point toward the "open" position even when calcium is still low, causing the heart to contract too readily, too forcefully, and eventually to remodel in dangerous ways.

The Mechanism

TPM1 encodes the alpha-tropomyosin chain22 alpha-tropomyosin chain
One of the two major sarcomeric tropomyosin isoforms; TPM1 is the cardiac-dominant form while TPM2 predominates in slow skeletal muscle
, the primary regulatory component of the cardiac thin filament. At position 175, the normal aspartate residue (D) forms ionic interactions that hold tropomyosin in the blocked conformation at low calcium. The D175N substitution (G>A on chromosome 15, GRCh38: chr15:63060899) replaces this negatively charged aspartate with the neutral asparagine, weakening the restraint on tropomyosin's movement.

The result, demonstrated directly by Borovikov et al. using fluorescence-labeled thin filaments33 Borovikov et al. using fluorescence-labeled thin filaments
The team incorporated Asp175Asn tropomyosin into isolated muscle fibers and tracked positional changes during the ATPase cycle
, is that D175N tropomyosin stays shifted toward the open state throughout the contraction cycle, increasing the affinity of myosin for actin and allowing more cross-bridges to attach at any given calcium concentration. Calcium sensitivity of the thin filament rises — the heart contracts harder per unit of calcium signal. Over years, hypercontractility drives hypertrophic remodeling44 hypertrophic remodeling
Asymmetric thickening of the left ventricular wall, particularly the interventricular septum, the cardinal anatomical feature of HCM
, diastolic dysfunction, and eventually outflow tract obstruction or arrhythmia.

The Evidence

D175N is one of the best-characterized pathogenic tropomyosin variants in cardiology. It was classified by ClinVar as Pathogenic with a two-star review ("criteria provided, multiple submitters, no conflicts") across 22 submitting laboratories, including GeneDx, Blueprint Genetics, Invitae, and Color Diagnostics.

In Finland, D175N is a founder mutation55 founder mutation
A variant that entered a population from a small number of ancestors and is now found at higher frequency than the global average due to population expansion from a bottleneck
with geographic clustering in central and western Finland. Jääskeläinen et al. (2013)66 Jääskeläinen et al. (2013)
Screening of 306 unrelated Finnish HCM patients from a catchment area of ~4 million people
identified D175N in 6.5% of cases; an earlier regional study found it in 11% of HCM patients in eastern Finland, where it accounted for a substantial fraction of all diagnoses alongside five other founder mutations.

Imaging studies demonstrate the functional impact directly. Sipola et al. (Radiology, 2005)77 Sipola et al. (Radiology, 2005)
Cine MRI in 24 D175N carriers vs 17 healthy controls, mean age 42
found that the proportion of hypokinetic myocardial segments was 37% in carriers versus 12% in controls (p < 0.001), and that the severity of contractile impairment independently predicted both LV mass (R² = 0.42) and maximal wall thickness (R² = 0.48). More recent genotype-outcome data from Conde et al. (2025)88 Conde et al. (2025)
Retrospective cohort of 77 genotyped HCM patients with cardiac MRI, collected 2018–2024
found that thin filament variants — the class that includes TPM1 D175N — were associated with an 80% rate of non-sustained ventricular tachycardia and a 4.4-fold increased risk of major adverse cardiovascular events compared to mutation-negative HCM.

The nationwide FinHCM study (2019)99 FinHCM study (2019)
382 unrelated index patients, 482 total participants including relatives, followed longitudinally
found annual all-cause mortality of 1.70% among HCM patients carrying sarcomere mutations, roughly double the 0.87% rate in matched general population. Sudden cardiac death events were rare (n=8) but independent risk factors included greater LV wall thickness and systolic dysfunction.

Practical Actions

Because D175N acts in an autosomal dominant fashion, a single copy is sufficient to cause disease. Approximately 50% of first-degree relatives of an affected individual will carry the variant. Cascade genetic testing of all first-degree relatives (parents, siblings, children) is the cornerstone of management — relatives who test negative require no further cardiac surveillance for this variant, while those who test positive enter a monitoring program.

For carriers, management follows ESC and ACC/AHA hypertrophic cardiomyopathy guidelines1010 ESC and ACC/AHA hypertrophic cardiomyopathy guidelines
European Society of Cardiology 2023 HCM guidelines and ACC/AHA 2020 guidelines
. Annual or biennial echocardiography and periodic Holter monitoring are standard. ICD implantation decisions are individualized using a formal SCD risk calculator (ESC HCM Risk-SCD score, which considers LV thickness, family SCD history, unexplained syncope, non-sustained VT, and LV outflow gradient). The phenotype in D175N carriers spans from subclinical hypertrophy to significant obstruction and arrhythmia, making serial monitoring essential.

Early-stage carriers may show the hypermetabolic compensatory state documented by PET imaging before overt hypertrophy emerges. This window represents an opportunity to establish specialist follow-up and baseline imaging before structural changes progress.

Interactions

HCM caused by D175N follows the "final common pathway" hypothesis: multiple sarcomere gene variants converge on the same phenotype via different mechanisms. Compound or double heterozygosity — carrying D175N alongside a pathogenic variant in MYH7 (beta-myosin heavy chain), MYBPC3 (cardiac myosin-binding protein C), or other sarcomere genes — is documented in individual cases and generally associated with more severe, earlier-onset disease. The FinHCM cohort included patients with multiple pathogenic sarcomere variants who showed accelerated hypertrophy and higher SCD risk. When cascade testing reveals that a family member carries both D175N and a second sarcomere variant, subspecialist referral for intensified surveillance is warranted.

Genotype Interpretations

What each possible genotype means for this variant:

GG “Non-carrier” Normal

No TPM1 D175N variant — standard cardiac tropomyosin function

You carry two copies of the reference G allele at rs104894503, meaning you do not carry the pathogenic TPM1 D175N variant associated with familial hypertrophic cardiomyopathy (HCM). Your alpha-tropomyosin protein has the normal aspartate residue at position 175, and thin filament calcium sensitivity is expected to be within the normal range for this locus. This is the genotype found in the overwhelming majority of people worldwide — the D175N allele is extremely rare globally (frequency ~0.003%), though it reaches ~1% in the Finnish population due to a founder effect.

AA “Homozygous — Extremely Rare” High Risk Critical

Two copies of pathogenic TPM1 D175N — homozygous state, extremely rare

The homozygous state means both copies of TPM1 encode the D175N alpha-tropomyosin variant with no wild-type protein production. The entire thin filament calcium sensitivity shift documented in heterozygotes would be present at full dosage. In other dominant HCM genes where homozygous pathogenic variants have been characterized (MYBPC3, MYH7), the phenotype is consistently more severe and earlier in onset than heterozygotes — including childhood-onset HCM, biventricular involvement, and higher rates of progression to systolic dysfunction.

Given the extreme rarity of this genotype, an AA result should prompt careful verification of the laboratory result (technical artifact is possible) and, if confirmed, immediate referral to a tertiary HCM center with pediatric and adult congenital heart disease expertise.

AG “Heterozygous Carrier” Carrier Warning

One copy of the pathogenic TPM1 D175N variant — autosomal dominant HCM risk

The TPM1 D175N substitution (Asp175Asn) weakens ionic bonds that normally hold alpha-tropomyosin in the blocked (off) position at low calcium. With these bonds compromised, the thin filament spends more time in the open (on) state even between beats, allowing excessive myosin cross-bridge attachment. The heart compensates by increasing ATP consumption and eventually remodeling — the interventricular septum and LV wall thicken asymmetrically, diastolic filling becomes impaired, and in some individuals outflow tract obstruction develops.

Clinical expression is heterogeneous even within families sharing the same mutation. Imaging studies document hypokinetic segments in 37% of carriers vs 12% of controls (Sipola et al., Radiology 2005), and metabolic PET studies show a compensatory hypermetabolic state in early-stage carriers before overt hypertrophy. The Finnish nationwide HCM study found that sarcomere mutation carriers face approximately double the annual all-cause mortality of the matched general population. Recent genotype-outcome data link thin filament variants specifically to an 80% rate of non-sustained ventricular tachycardia and a 4.4-fold increased MACE risk.

First-degree relatives (parents, siblings, children) each have a 50% chance of carrying D175N. Cascade genetic testing is strongly recommended — relatives who test negative need no further TPM1-specific cardiac surveillance.