rs2293275 — LHCGR Asn312Ser (N312S)
Affects LH/hCG receptor sensitivity near a glycosylation site, influencing ovarian response to LH stimulation, PCOS risk, ovarian aging, and IVF outcomes
Details
- Gene
- LHCGR
- Chromosome
- 2
- Risk allele
- T
- Protein change
- p.Asn312Ser
- Consequence
- Missense
- Inheritance
- Codominant
- Clinical
- Risk Factor
- Evidence
- Strong
- Chip coverage
- v3 v4 v5
Population Frequency
Ancestry Frequencies
Related SNPs
Category
Fertility & Reproductive HealthSee your personal result for LHCGR
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LHCGR N312S — The LH Receptor Variant That Shapes Ovarian Sensitivity and Reproductive Aging
The luteinizing hormone/choriogonadotropin receptor (LHCGR) sits on the surface of ovarian theca cells, testicular Leydig cells, and luteinized granulosa cells, where it receives LH and hCG signals that drive ovulation, progesterone production, and testosterone synthesis. The N312S variant — a single amino acid change at position 312 from asparagine (N) to serine (S) — sits in exon 10 near a glycosylation site in the extracellular domain11 near a glycosylation site in the extracellular domain
The asparagine at position 312 is a potential N-linked glycosylation sequon; replacing it with serine eliminates this site. This change alters receptor sensitivity to LH signaling, with measurable consequences for PCOS risk, ovarian reserve longevity, and IVF treatment response.
The Mechanism
LHCGR is a G protein-coupled receptor. When LH binds, the receptor activates Gs proteins, stimulating adenylyl cyclase to produce cAMP, which drives steroidogenesis and ovulation. The N312S variant changes a potential N-linked glycosylation site in the receptor's ectodomain. Asparagine (N) at position 312 can be glycosylated, while serine (S) cannot. In vitro studies of granulosa cells show that women homozygous for asparagine at both LHCGR 312 and FSHR 680 display lower cAMP activity22 In vitro studies of granulosa cells show that women homozygous for asparagine at both LHCGR 312 and FSHR 680 display lower cAMP activity
Reduced receptor signaling when both gonadotropin receptors carry the asparagine variant compared to serine homozygotes. The asparagine variant appears to create a receptor that is more sensitive to LH — requiring less LH to achieve the same downstream effect — which sounds advantageous but can dysregulate the tightly calibrated LH-FSH balance that governs normal follicular development.
The Evidence
PCOS risk. A 2012 case-control study in 198 PCOS and 187 control Sardinian women33 A 2012 case-control study in 198 PCOS and 187 control Sardinian women
Capalbo et al. Clinical Endocrinology 2012 found that carrying at least one N allele (T on plus strand) increased PCOS risk 2-fold (OR 2.04, 95% CI 1.32–3.14, P=0.001), with NN homozygotes at 2.7-fold risk (OR 2.73, 95% CI 1.25–5.95, P=0.01). A 2015 Indian study44 A 2015 Indian study
Thathapudi et al. Genetic Testing and Molecular Biomarkers found the SS genotype (GG on coding strand) associated with higher PCOS risk in their population (OR 3.36), elevated BMI, and higher LH/FSH ratios — though the direction of the risk allele differed from the Sardinian study, highlighting population heterogeneity. A recent meta-analysis of 10 studies (1,431 PCOS cases, 1,317 controls) found no significant overall association, suggesting the effect may be population-specific rather than universal.
Ovarian aging. A 2025 multicenter study of 1,240 Chinese women with diminished ovarian reserve or primary ovarian insufficiency55 A 2025 multicenter study of 1,240 Chinese women with diminished ovarian reserve or primary ovarian insufficiency
Ma et al. Reproductive Biology and Endocrinology 2025 versus 72,846 controls found the TT genotype (NN) at 3.7-fold increased risk of POI (OR 3.73, 95% CI 2.09–6.67, P<0.001). Critically, TT carriers were diagnosed with POI approximately 7 years earlier (25.5 ± 6.4 years) than CC carriers (32.0 ± 5.1 years). The CT genotype (NS) also showed elevated DOR risk (OR 1.47, 95% CI 1.27–1.69). This large-scale finding positions LHCGR N312S as a potential biomarker for accelerated ovarian aging.
IVF outcomes. A prospective study of 617 IVF patients66 A prospective study of 617 IVF patients
Lindgren et al. Human Reproduction 2016 found that LHCGR S312 carriers (C allele) had higher pregnancy rates (OR 1.61, P=0.008), and women homozygous for serine at both LHCGR and FSHR achieved dramatically higher pregnancy rates (OR 14.4, P=0.016). The follow-up study of 665 women77 The follow-up study of 665 women
Lindgren et al. Journal of Assisted Reproduction and Genetics 2019 confirmed that women with 4 serine alleles across both receptors had a 62% cumulative live birth rate across three IVF cycles versus 43–47% for other genotypes (adjusted HR 1.89, P=0.049). Genotype-guided LH supplementation88 Genotype-guided LH supplementation
Ramaraju et al. Frontiers in Endocrinology 2021 in 193 women showed improved pregnancy rates when LH dosing was matched to N312S genotype (P=0.049).
However, the evidence is not unanimous. A 2022 study of 1,183 patients99 A 2022 study of 1,183 patients
Pirtea et al. Fertility and Sterility found no significant association between FSHR/LHCGR polymorphisms and oocyte yield, blastocyst rate, implantation, or live birth, concluding these variants "should not be considered reproductive predictors." This discrepancy may reflect differences in stimulation protocols, population composition, or the statistical power needed to detect interaction effects.
Practical Implications
The clinical utility of LHCGR N312S genotyping is strongest in two contexts: assessing PCOS risk and personalizing IVF protocols.
For women with TT (NN) genotype, the enhanced LH receptor sensitivity may contribute to the LH-driven androgen excess that characterizes PCOS. The 2025 Chinese study's finding of accelerated ovarian aging in TT carriers suggests this genotype warrants proactive ovarian reserve monitoring, particularly for women planning to delay childbearing.
For IVF, the interaction between LHCGR and FSHR genotypes defines a pharmacogenetic profile. Women with CC at both rs2293275 and rs6166 (SS at both receptors) appear to have an optimally responsive gonadal axis for ART, while TT carriers at LHCGR may benefit from adjusted LH supplementation protocols. The genotype-guided approach — withholding exogenous LH from NN carriers (whose receptors are already highly sensitive) and providing full-dose LH to SS carriers — showed promising results in the Ramaraju 2021 trial.
For men, LHCGR mediates LH signaling to Leydig cells for testosterone production. While specific rs2293275 data in male fertility is limited, the receptor's role in spermatogenesis makes this variant relevant to male reproductive assessment.
Interactions
FSHR rs6166 (N680S): The strongest documented interaction is with the FSH receptor N680S variant. Women homozygous for serine at both LHCGR N312S (CC genotype) and FSHR N680S (GG genotype) — the "4S" phenotype — had a 62% cumulative live birth rate across three IVF cycles versus 43–47% for other combined genotypes (adjusted HR 1.89, P=0.049). In vitro, granulosa cells from women homozygous for asparagine at both receptors showed lower cAMP activity, suggesting a combined receptor sensitivity profile. This interaction defines a pharmacogenetic subgroup: 4S women appear to respond particularly well to standard IVF protocols, while 4N women (TT at rs2293275 + AA at rs6166) may represent a distinct poor-response phenotype requiring protocol modification.
Compound implication for LHCGR TT + FSHR AA: Women carrying TT at rs2293275 and AA at rs6166 (4N phenotype) may have a combined receptor sensitivity profile that paradoxically impairs IVF response despite individually heightened receptor sensitivity. These women may benefit from modified stimulation protocols with carefully titrated gonadotropin dosing and extended monitoring. Conversely, the 4S phenotype (CC at rs2293275 + GG at rs6166) may represent the optimal pharmacogenetic profile for standard ART protocols.
Genotype Interpretations
What each possible genotype means for this variant:
Two copies of the Ser variant — standard LH receptor glycosylation and signaling, favorable IVF profile
The CC genotype produces a receptor without the potential glycosylation at position 312. In a prospective study of 665 IVF patients, women with 4 serine alleles across both LHCGR and FSHR had a 62% cumulative live birth rate versus 43–47% for other genotypes (adjusted HR 1.89, P=0.049). The 2025 Chinese multicenter study showed CC carriers had the latest POI onset (32.0 ± 5.1 years) and the lowest ovarian aging risk.
This genotype is considered the reference/favorable state for reproductive outcomes. Standard IVF protocols were largely designed around this receptor profile.
One copy of the Asn variant — intermediate LH receptor sensitivity with moderately elevated PCOS and ovarian aging risk
The heterozygous state produces a mixed receptor population on target cell surfaces. Clinical studies generally show CT carriers fall between TT and CC groups for both PCOS risk and IVF outcomes. In the Lindgren 2016 study, the effect on IVF pregnancy rates was primarily driven by the homozygous states, with heterozygotes showing intermediate results.
For PCOS, the 2012 Sardinian study found heterozygous carriers at approximately 2-fold elevated risk. The 2025 Chinese multicenter study found CT carriers had a modest but significant elevation in diminished ovarian reserve risk (OR 1.47, 95% CI 1.27–1.69). This intermediate effect is consistent with the codominant inheritance pattern.
Two copies of the Asn variant — enhanced LH receptor sensitivity with significantly elevated PCOS and ovarian aging risk
The TT (NN) genotype retains glycosylation capacity at position 312 on both alleles, producing a uniformly more sensitive LH receptor population. The clinical consequences are substantial:
The 2025 multicenter Chinese study (1,240 cases, 72,846 controls) found TT carriers at 3.7-fold elevated POI risk (OR 3.73, 95% CI 2.09–6.67, P<0.001) with a mean diagnosis age of 25.5 years versus 32.0 years for CC carriers — a 7-year difference. The 2012 Sardinian study found 2.7-fold PCOS risk (OR 2.73, 95% CI 1.25–5.95) for TT homozygotes.
For IVF, the Lindgren studies showed TT carriers had lower pregnancy rates. The genotype-guided approach from Ramaraju 2021 withheld exogenous LH from NN homozygotes entirely (0 IU/day), reasoning that their receptors are already sufficiently sensitive to endogenous LH. This approach improved pregnancy rates from 43.75% to 47.62% for the TT genotype group.
The enhanced LH sensitivity also means the LH-driven androgen production in theca cells may be amplified, contributing to the hyperandrogenic state seen in PCOS. This provides a mechanistic link between the genotype and the clinical phenotype.
Key References
Lindgren et al. 2016 prospective study (n=617) showing combined FSHR+LHCGR SS homozygosity predicts IVF pregnancy (OR 14.4, P=0.016) with LHCGR S312 carriers having higher pregnancy rates (OR 1.61, P=0.008)
Lindgren et al. 2019 follow-up (n=665) showing women with 4 serine alleles across both receptors had 62% cumulative live birth rate vs 43-47% for other genotypes (adjusted HR 1.89, P=0.049)
Ramaraju et al. 2021 retrospective study (n=193) showing genotype-guided LH supplementation improved pregnancy rate (P=0.049) with GG carriers benefiting most from full-dose LH supplementation
Capalbo et al. 2012 case-control study in Sardinian women (n=385) showing 312N allele confers up to 2.7-fold increased PCOS risk (OR 2.73 for NN homozygotes, P=0.01)
Thathapudi et al. 2015 study showing GG genotype (SS on coding strand) associated with 3.36-fold PCOS risk (P<0.0001) and elevated LH/FSH ratios
Ma et al. 2025 multicenter study (n=1,240 cases vs 72,846 controls) in Chinese women showing AA genotype (NN) associated with 3.7-fold increased POI risk and 7 years earlier onset
Pirtea et al. 2022 study (n=1,183) finding no significant association of FSHR/LHCGR polymorphisms with oocyte yield, blastocyst rate, or live birth, challenging the predictive value