|
rs10093345
|
EIF4EBP1
EIF4EBP1 rs10093345
|
Intergenic GWAS locus near EIF4EBP1 (encoding the mTOR translation repressor ...
|
Endometriosis & Uterine Health
|
|
Moderate
|
|
rs1046089
|
PRRC2A
Arg1740His
|
Missense variant in PRRC2A (HLA-B associated transcript) linked to age at nat...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs104894085
|
STAR
Q258X (c.772C>T)
|
Nonsense mutation in STAR that abolishes steroidogenic acute regulatory prote...
|
Reproductive Hormones
|
|
Established
|
|
rs104894137
|
CYP17A1
Pro342Thr
|
Missense variant in CYP17A1 reducing both 17α-hydroxylase and 17,20-lyase act...
|
Reproductive Hormones
|
|
Strong
|
|
rs10766383
|
NUCB2
|
Intronic NUCB2 variant associated with type 2 diabetes risk in females and or...
|
Hormones & Sleep
|
|
Moderate
|
|
rs104894138
|
CYP17A1
Arg96Trp (R96W)
|
Pathogenic missense variant abolishing 17α-hydroxylase/17,20-lyase activity, ...
|
Reproductive Hormones
|
|
Established
|
|
rs11674184
|
GREB1
GREB1 Estrogen-Responsive Endometriosis Variant
|
Intronic GREB1 variant at 2p25.1 where the T allele (GRCh38 reference) is ass...
|
Endometriosis & Uterine Health
|
|
Strong
|
|
rs11031006
|
FSHB
|
Distal enhancer variant ~26 kb upstream of FSHB associated with FSH levels, d...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs104894142
|
CYP17A1
R362C (Arg362Cys)
|
Pathogenic CYP17A1 missense variant causing combined 17α-hydroxylase/17,20-ly...
|
Reproductive Hormones
|
|
Established
|
|
rs11206244
|
DIO1
C785T
|
Common variant in the 3' UTR of the DIO1 gene affecting thyroid hormone metab...
|
Hormones & Sleep
|
|
Strong
|
|
rs104894143
|
CYP17A1
W406R (Trp406Arg)
|
Pathogenic missense variant in CYP17A1 causing complete loss of 17α-hydroxyla...
|
Reproductive Hormones
|
|
Established
|
|
rs1137101
|
LEPR
Q223R (Gln223Arg)
|
Common leptin receptor variant in the leptin-binding domain affecting satiety...
|
Hormones & Sleep
|
|
Moderate
|
|
rs12470652
|
LHCGR
Asn291Ser (N291S)
|
Missense variant in the LH/hCG receptor producing a gain-of-function increase...
|
Fertility & Ovarian Function
|
|
Moderate
|
|
rs12700667
|
7p15.2 (near HOXA10/HOXA11)
|
Intergenic GWAS locus upstream of homeobox genes HOXA10 and HOXA11 that may i...
|
Endometriosis & Uterine Health
|
|
Established
|
|
rs1144566
|
RGS16
RGS16 H137R
|
Missense variant in RGS16 that substitutes histidine for arginine at position...
|
Hormones & Sleep
|
|
Moderate
|
|
rs12478601
|
THADA
THADA PCOS/Insulin Resistance
|
Intronic variant in THADA (thyroid adenoma associated) on chromosome 2p21; th...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs121908866
|
TSHR
W546X
|
Nonsense mutation in the TSHR gene (Trp546Ter) that eliminates functional TSH...
|
Reproductive Hormones
|
|
Strong
|
|
rs13405728
|
LHCGR
|
Intronic variant in the LH/choriogonadotropin receptor gene associated with P...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs11545787
|
RASD1
RASD1 photic entrainment variant
|
3' UTR variant in RASD1 (Dexras1), a GTPase that gates light signals to the c...
|
Hormones & Sleep
|
|
Strong
|
|
rs13164856
|
IRF1
|
PCOS-susceptibility tag SNP at the IRF1/RAD50 5q31 locus, associated with ele...
|
Endometriosis & Uterine Health
|
|
Strong
|
|
rs12970134
|
MC4R
MC4R region variant
|
Near-gene variant ~188kb downstream of MC4R associated with increased waist c...
|
Appetite & Obesity
|
|
Strong
|
|
rs13394619
|
GREB1
|
Intronic variant in GREB1, an estrogen-responsive gene; the G allele is assoc...
|
Endometriosis & Uterine Health
|
|
Established
|
|
rs137852689
|
STAR
R217T (Arg217Thr)
|
Pathogenic STAR variant that abolishes steroidogenic acute regulatory protein...
|
Reproductive Hormones
|
|
Established
|
|
rs1784692
|
ZBTB16
ZBTB16/PLZF Ovarian Volume
|
An intronic variant in the ZBTB16 (PLZF) locus on chromosome 11q23.2; the T a...
|
Fertility & Ovarian Function
|
|
Moderate
|
|
rs12736689
|
RGS16
|
Intronic/regulatory variant near RGS16 that is the strongest single-locus mor...
|
Hormones & Sleep
|
|
Strong
|
|
rs1529868
|
GREB1
GREB1 rs1529868
|
Intronic GREB1 variant at 2p25.1 (c.772+34) in high LD (r²=0.853 CEU) with th...
|
Endometriosis & Uterine Health
|
|
Moderate
|
|
rs2178575
|
ERBB4
ERBB4/HER4 PCOS Folliculogenesis
|
An intronic variant in ERBB4 on chromosome 2q34; the A allele tags reduced ER...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs2180439
|
WNT10A
|
Lead SNP at the 20p11 locus, the strongest autosomal genetic risk factor for ...
|
Skin & Eyes
|
|
Strong
|
|
rs1330
|
NUCB2
|
Intronic NUCB2 variant associated with obesity risk in males, type 2 diabetes...
|
Hormones & Sleep
|
|
Moderate
|
|
rs2268361
|
FSHR
FSHR Intronic Variant (c.669-5590)
|
Intronic variant in the FSHR gene associated with PCOS susceptibility and FSH...
|
Fertility & Ovarian Function
|
|
Moderate
|
|
rs2268363
|
FSHR
FSHR ART Response Variant
|
Intronic variant in the FSH receptor gene; identified in a genome-wide associ...
|
Fertility & Ovarian Function
|
|
Emerging
|
|
rs1971256
|
CCDC170
CCDC170/ESR1 Endometriosis Estrogen Signaling Variant
|
Intronic variant in CCDC170 at the 6q25.1 estrogen-signaling locus, co-regula...
|
Endometriosis & Uterine Health
|
|
Strong
|
|
rs2271194
|
ERBB3
ERBB3/RAB5B PCOS Metabolic
|
A splice-region variant at the ERBB3/RAB5B locus on chromosome 12q13.2, a rep...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs258750
|
NR3C1
NR3C1 Intronic Variant (c.2181+244A>G)
|
Intronic NR3C1 variant tagging glucocorticoid receptor gene haplotype blocks ...
|
Reproductive Hormones
|
|
Moderate
|
|
rs2293275
|
LHCGR
Asn312Ser (N312S)
|
Affects LH/hCG receptor sensitivity near a glycosylation site, influencing ov...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs2303369
|
FNDC4
|
Intronic variant in FNDC4 (fibronectin type III domain containing 4) on chrom...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs2883929
|
NR3C2
NR3C2 I3 intron variant
|
Intronic variant in the mineralocorticoid receptor gene associated with alter...
|
Reproductive Hormones
|
|
Moderate
|
|
rs2456181
|
ZNF346
|
Intronic variant near ZNF346 and FGFR4 on chromosome 5q35.2, associated with ...
|
Endometriosis & Uterine Health
|
|
Strong
|
|
rs2479106
|
DENND1A
|
Intronic variant in the androgen-regulating DENND1A gene associated with poly...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs17679445
|
PNPO
Arg116Gln
|
Missense variant in pyridoxamine 5'-phosphate oxidase that reduces the enzyme...
|
Hormones & Sleep
|
|
Moderate
|
|
rs314276
|
LIN28B
|
Intronic variant in LIN28B associated with puberty timing — the C allele may ...
|
Fertility & Ovarian Function
|
|
Established
|
|
rs4704397
|
PDE8B
PDE8B TSH-associated variant
|
Intronic variant in PDE8B (phosphodiesterase 8B) strongly associated with ser...
|
Reproductive Hormones
|
|
Strong
|
|
rs2922126
|
GHSR
GHSR A/G (rs2922126)
|
Upstream regulatory variant near the ghrelin receptor gene; the A allele is a...
|
Appetite & Obesity
|
|
Moderate
|
|
rs4784165
|
TOX3
TOX3 rs4784165
|
Intronic PCOS susceptibility variant near TOX3; the G allele is associated wi...
|
Fertility & Ovarian Function
|
|
Moderate
|
|
rs5934505
|
FAM9B
|
Intergenic GWAS variant on chromosome Xp22, near the testis-specific genes FA...
|
Reproductive Hormones
|
|
Strong
|
|
rs4944653
|
PRSS23
PRSS23 Ovarian Serine Protease
|
An intergenic tag SNP ~50 kb downstream of PRSS23 (serine protease 23) on chr...
|
Fertility & Ovarian Function
|
|
Moderate
|
|
rs6165
|
FSHR
Ala307Thr (T307A)
|
Missense variant in the extracellular domain of the FSH receptor that removes...
|
Fertility & Ovarian Function
|
|
Strong
|
|
rs6259
|
SHBG
Asp356Asn
|
Missense variant in SHBG exon 8 (p.Asp356Asn, historically Asp327Asn in matur...
|
Reproductive Hormones
|
|
Moderate
|
|
rs7759938
|
LIN28B
|
Regulatory variant near LIN28B associated with puberty timing — the T allele ...
|
Fertility & Ovarian Function
|
|
Established
|
|
rs1884614
|
HNF4A
HNF4A P2 Promoter rs1884614
|
Intronic variant tagging the HNF4A P2 promoter risk haplotype; the T allele i...
|
Hormones & Sleep
|
|
Moderate
|
|
rs7852296
|
DENND1A
DENND1A PCOS Susceptibility Variant
|
An intronic variant in the DENND1A locus on chromosome 9q33.3, a robustly rep...
|
Fertility & Ovarian Function
|
|
Moderate
|
|
rs490683
|
GHSR
GHSR Promoter NF-1 Site Variant
|
Promoter variant in the ghrelin receptor gene that disrupts NF-1 transcriptio...
|
Appetite & Obesity
|
|
Moderate
|
|
rs727428
|
SHBG
SHBG +1091 C>T
|
Regulatory variant 1 kb downstream of the SHBG gene that reduces sex hormone-...
|
Reproductive Hormones
|
|
Strong
|
|
rs804279
|
GATA4
GATA4/NEIL2 PCOS Susceptibility
|
Intergenic variant at the GATA4/NEIL2 locus on chromosome 8p23.1 associated w...
|
Fertility & Ovarian Function
|
|
Moderate
|
|
rs2016105
|
ELK3
ELK3 TSH regulatory variant
|
Intronic regulatory variant in ELK3 influencing circulating TSH levels and hy...
|
Hormones & Sleep
|
|
Strong
|
|
rs509035
|
GHSR
GHSR Metabolic Syndrome Variant
|
Intronic variant in the ghrelin receptor gene; the A allele is associated wit...
|
Appetite & Obesity
|
|
Strong
|
|
rs4395923
|
CYP7B1
CYP7B1 Neurosteroid Hydroxylase
|
Intronic variant in the brain neurosteroid hydroxylase gene affecting DHEA an...
|
Mood & Behavior
|
|
Emerging
|
|
rs1799817
|
INSR
His1085His
|
Synonymous variant in the tyrosine kinase domain of the insulin receptor; the...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs2144908
|
HNF4A
HNF4A P2 Block rs2144908
|
Intronic HNF4A P2 promoter haplotype tag variant; carriers have modestly impa...
|
Hormones & Sleep
|
|
Moderate
|
|
rs858518
|
SHBG
SHBG intronic regulatory variant
|
Intronic variant within the SHBG gene that participates in a haplotype (with ...
|
Reproductive Hormones
|
|
Moderate
|
|
rs7521902
|
WNT4
|
Intronic variant near WNT4 on chromosome 1p36.12 associated in multiple GWAS ...
|
Endometriosis & Uterine Health
|
|
Strong
|
|
rs7907606
|
STN1
|
Intergenic variant near STN1 (telomere maintenance) and SLK (cytoskeletal kin...
|
Endometriosis & Uterine Health
|
|
Moderate
|
|
rs2291725
|
GIP
Ser103Gly
|
Missense variant in the GIP incretin hormone that changes its bioactivity and...
|
Hormones & Sleep
|
|
Moderate
|
|
rs2059807
|
INSR
INSR intronic variant
|
Intronic INSR variant associated with PCOS susceptibility and metabolic syndr...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs9819506
|
GHSR
GHSR Promoter Variant (Ghrelin Receptor Signaling)
|
Promoter-region tag SNP in the ghrelin receptor gene associated with body wei...
|
Appetite & Obesity
|
|
Moderate
|
|
rs34903499
|
VIP
|
Synonymous coding variant in the VIP gene (Asn133Asn); the T allele may alter...
|
Hormones & Sleep
|
|
Emerging
|
|
rs35833281
|
HCRTR2
|
Intronic variant in the orexin/hypocretin receptor 2 gene that tags the HCRTR...
|
Hormones & Sleep
|
|
Strong
|
|
rs516134
|
RGS16
RGS16 chronotype variant
|
Regulatory variant ~20 kb downstream of RGS16 that influences circadian chron...
|
Hormones & Sleep
|
|
Strong
|
|
rs5443
|
GNB3
C825T
|
Synonymous exon-10 variant that triggers alternative splicing of the G-protei...
|
Hormones & Sleep
|
|
Strong
|
|
rs6166
|
FSHR
Asn680Ser (N680S)
|
Affects FSH receptor sensitivity, determining ovarian response to FSH stimula...
|
Hormones & Sleep
|
|
Strong
|
|
rs6885099
|
PDE8B
PDE8B TSH variant
|
Intronic TSH quantitative trait locus in phosphodiesterase 8B — the G allele ...
|
Hormones & Sleep
|
|
Strong
|
|
rs700518
|
CYP19A1
Val80
|
Synonymous variant in aromatase gene affecting estrogen production, bone dens...
|
Hormones & Sleep
|
|
Strong
|
|
rs757081
|
NUCB2
Gln338Glu (Q338E)
|
Missense variant in nucleobindin-2, the precursor protein cleaved to produce ...
|
Hormones & Sleep
|
|
Moderate
|
|
rs76428106
|
FLT3
FLT3 Intronic Splice Variant
|
Low-frequency intronic variant in FLT3 that creates a cryptic splice site, tr...
|
Hormones & Sleep
|
|
Strong
|
|
rs7850258
|
PTCSC2
|
Intronic variant in the PTCSC2 lncRNA that alters a FOXE1 enhancer element, m...
|
Hormones & Sleep
|
|
Strong
|
|
rs9479402
|
VIP
VIP chronotype variant
|
Intergenic variant ~54 kb downstream of the VIP gene; the C allele reduces VI...
|
Hormones & Sleep
|
|
Strong
|
|
rs9565309
|
FBXL3
FBXL3 circadian variant
|
Regulatory variant near FBXL3 that modulates circadian period length; the C a...
|
Hormones & Sleep
|
|
Strong
|
|
rs965513
|
FOXE1
|
Strongest GWAS thyroid locus — regulatory variant near FOXE1 affecting thyroi...
|
Hormones & Sleep
|
|
Strong
|