rs72709458 — TERT

Intronic TERT variant that increases uterine fibroid (leiomyoma) risk

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Uterine fibroids (leiomyomas) are benign smooth-muscle tumors of the uterus that affect up to 70% of women by age 50. While they are common, their underlying biology is clonal — each fibroid arises from a single cell that escapes normal growth control. A genome-wide association study of more than 400,000 women in the UK Biobank pinpointed rs72709458 in the TERT gene as one of the strongest genetic risk factors for leiomyoma, with a genome-wide significant odds ratio of 1.12 (p = 6.9 × 10⁻¹⁶).

TERT encodes the catalytic subunit of telomerase, the enzyme that rebuilds telomere caps on chromosome ends after cell division. Without adequate telomerase activity, telomeres shorten with each cell division until they trigger a DNA damage response — usually stopping the cell from dividing further, but sometimes allowing chromosomal instability and aberrant clonal expansion instead.

The rs72709458 variant sits in an intron of TERT at chromosome 5, position 1,283,640 (GRCh38). It does not change the protein sequence directly. The TERT, TERC, and OBFC1 gene cluster together represent the telomere maintenance axis in the leiomyoma GWAS, grouping with TP53 and ATM as a "genome stability" gene cluster distinct from the "genitourinary development" gene cluster (WT1, ESR1/SYNE1, CDC42/WNT4).

Notably, rs72709458 and rs2853676 at TERT did not independently associate with telomere length in this study — unlike rs2736100, which was significantly associated with shorter telomere length in tumor tissue. This suggests rs72709458 may act through a tissue-specific or context-specific mechanism rather than globally shortening telomeres. The combined effect of all three TERT SNPs plus TERC and OBFC1 variants showed a negative trend toward shorter telomeres (p = 0.055), consistent with a cumulative model.

Välimäki et al. (2018, eLife)11 Välimäki et al. (2018, eLife)
Genetic predisposition to uterine leiomyoma is determined by loci for genitourinary development and genome stability
conducted the largest uterine leiomyoma GWAS to date using the UK Biobank, identifying 22 genome-wide significant loci. The rs72709458 T allele at the TERT locus showed OR = 1.12, p = 6.9 × 10⁻¹⁶ — a highly reproducible, statistically unambiguous association. The effect allele frequency of approximately 0.21 means that a substantial fraction of women carry at least one T allele.

A subsequent Russian case-control study22 A subsequent Russian case-control study
GWAS-Significant Loci and Uterine Fibroids Risk: Analysis of Associations, Gene-Gene and Gene-Environmental Interactions
genotyped 737 hospitalized women with uterine fibroids and 451 controls for seven GWAS-validated SNPs including rs72709458. The study identified a gene-environment interaction between the TERT variant and prior abortion history.

Vitamin D merits specific mention as a modifiable factor in fibroid biology. A comprehensive mechanistic review33 A comprehensive mechanistic review
The Role of Vitamin D in Uterine Fibroid Biology, Baird & Wise 2015
documents that vitamin D (1,25-dihydroxyvitamin D3) exerts direct anti-fibroid effects: it induces G1 cell cycle arrest in leiomyoma cells, downregulates anti-apoptotic proteins (Bcl-2, Bcl-xL), reduces extracellular matrix remodeling enzymes (MMP-2/9), and suppresses estrogen and progesterone receptor expression. Three large observational studies found inverse associations between serum vitamin D levels and fibroid prevalence, with adjusted ORs ranging from 0.68 to 2.5 depending on the study. African American women — who have 2–3× higher fibroid incidence and carry the rs72709458 T allele at a frequency of ~14.5% — are also 10× more likely to be vitamin D deficient. Whether optimizing vitamin D status specifically attenuates fibroid risk in genetically predisposed women has not been formally tested in a randomized trial, but the mechanistic and epidemiological rationale is substantial.

The rs72709458 T allele also has prior associations to glioma — illustrating the broad neoplasia-predisposing context of TERT variation.

For women who carry the T risk allele at rs72709458, the key message is that this genetic signal warrants increased awareness and proactive monitoring — not alarm. Uterine fibroids are common, usually benign, and often manageable. The OR of 1.12 per allele confers a modest individual risk increment; the variant matters most when combined with other risk factors (family history of fibroids, Black ethnicity, obesity, early menarche, low vitamin D).

The most evidence-supported modifiable interventions targeting fibroid biology include: - Optimizing vitamin D status: The mechanistic evidence is strong and the intervention is low-risk. Maintaining 25(OH)D levels ≥ 40 ng/mL is a reasonable target. - Early symptom reporting: Many fibroids are asymptomatic; those that become symptomatic cause heavy menstrual bleeding, pelvic pressure, or fertility impairment. Earlier diagnosis allows more conservative management options (myomectomy, UAE, progesterone IUDs). - Pelvic ultrasound awareness: Women with a genetic or family history of fibroids can discuss with their clinician whether surveillance ultrasound is appropriate, particularly in the reproductive years.

rs2736100 (TERT, intron 2): If you carry risk alleles at both rs72709458 and rs2736100, the combined effect on TERT-related genome stability may be greater than either alone.

rs2853676 (TERT): A third independent TERT signal for leiomyoma risk, also not individually associated with telomere length. Its biological relationship to rs72709458 is not yet fully characterized.

Genotype Interpretations

What each possible genotype means for this variant.

CC Standard Fibroid Risk Normal

No elevated TERT-related fibroid risk

You carry two copies of the common C allele at rs72709458, the reference genotype at this TERT locus. About 67% of women share this genotype. Your background risk for uterine fibroids from this particular genetic variant is not elevated — though fibroids remain common in the general population (affecting up to 70% of women by age 50), and other risk factors such as family history, ethnicity, and vitamin D status still apply.

CT One TERT Risk Allele Intermediate

Modestly elevated TERT-related fibroid risk — one risk allele present

The TERT gene encodes the catalytic subunit of telomerase, which maintains chromosomal stability by elongating telomeres after cell division.

Uterine fibroids are benign but can cause significant symptoms (heavy bleeding, pelvic pressure, subfertility). Early awareness enables earlier, more conservative management options. Vitamin D has direct anti-proliferative effects on leiomyoma cells and vitamin D deficiency is a well-documented risk factor that is fully modifiable.

TT Two TERT Risk Alleles High Risk

Elevated TERT-related fibroid risk — two risk copies

Two copies represent the highest-risk common genotype at this locus.

TERT-pathway leiomyoma risk is biologically additive: if you also carry risk alleles at rs2736100 or rs2853676 (other independent TERT loci) or at TERC or OBFC1, the combined telomere maintenance burden is greater. The combined effect of all these loci showed a negative trend toward shorter telomere length (p = 0.055), consistent with a cumulative impairment model.

Vitamin D has the strongest direct mechanistic and epidemiological evidence as a modifiable protective factor. In vitro and animal studies show it inhibits leiomyoma cell proliferation, induces apoptosis, and suppresses MMP-driven extracellular matrix expansion. Three clinical observational studies found inverse associations between serum vitamin D and fibroid prevalence.