Research

rs1801280 — NAT2 I114T

Phase II detoxification - acetylation of aromatic amines and certain medications

Established Risk Factor

Details

Gene
NAT2
Chromosome
8
Risk allele
C
Protein change
p.Ile114Thr
Consequence
Missense
Inheritance
Autosomal Recessive
Clinical
Risk Factor
Evidence
Established
Chip coverage
v3 v4 v5

Population Frequency

TT
36%
CT
47%
CC
17%

Ancestry Frequencies

european
44%
latino
35%
south_asian
34%
african
28%
east_asian
3%

NAT2 I114T - Your Detoxification Speed

N-acetyltransferase 2 (NAT2) is a Phase II 11 Phase II detoxification conjugates reactive intermediates from Phase I with small molecules to make them water-soluble and excretable detoxification enzyme that adds an acetyl group to aromatic amines and hydrazines, making them water-soluble so your body can excrete them. These substrates include environmental carcinogens from cigarette smoke, heterocyclic amines 22 Heterocyclic amines are carcinogenic compounds formed when meat is cooked at high temperatures, especially charring or grilling from cooked meat, and medications like isoniazid (tuberculosis treatment) and sulfasalazine.

The Mechanism

The I114T variant (rs1801280) changes isoleucine to threonine at position 114 of the NAT2 protein. The C allele (Thr) destabilizes the enzyme, leading to faster degradation and lower acetylation capacity. This is one of the most common "slow acetylator" alleles in European populations, characterizing the NAT2*5B haplotype. The C allele frequency is remarkably high in Europeans (~44%) but very rare in East Asians (~3%).

Slow vs. Rapid Acetylators

NAT2 acetylator status is determined by the combination of multiple variants (rs1801280, rs1799930, rs1208). You need two slow alleles (one from each parent) to be a slow acetylator. About 50-60% of Europeans are slow acetylators 33 This high frequency suggests slow acetylation may have been advantageous in certain ancestral environments due to the high frequency of these variants, compared to only 10-20% of East Asians.

Clinical Significance

Slow acetylators have increased risk of bladder cancer from occupational exposure to aromatic amines. A major meta-analysis44 major meta-analysis
Garcia-Closas M et al. NAT2 slow acetylation and bladder cancer risk. Lancet, 2005
found an overall OR of 1.4 (95% CI 1.2-1.7) for bladder cancer in slow acetylators, with stronger effects in cigarette smokers. Slow acetylators also require dose adjustments for isoniazid and are more prone to drug-induced lupus from certain medications. However, slow acetylation may actually be protective in some contexts - rapid acetylators have higher colorectal cancer risk from heterocyclic amines in well-done meat.

Practical Advice

If you are a slow acetylator: minimize exposure to cigarette smoke (active and secondhand), moderate consumption of heavily charred or grilled meats, and inform your doctor of your acetylator status if prescribed isoniazid or other NAT2 substrate medications.

Drug Interactions

isoniazid increased_toxicity CPIC
sulfasalazine increased_toxicity DPWG
hydralazine increased_toxicity literature
procainamide increased_toxicity literature

Genotype Interpretations

What each possible genotype means for this variant:

TT “Rapid Acetylator” Normal

Rapid acetylator at this position

Normal rapid acetylation at this NAT2 position. About 36% of Europeans share this genotype.

CT “Intermediate Acetylator” Intermediate

Intermediate acetylator

You carry one slow acetylator variant at this position. Combined with other NAT2 variants, this determines your overall acetylation speed. About 47% of Europeans share this genotype.

CC “Slow Acetylator” Slow Caution

Slow acetylator at this position

Slow acetylation at this NAT2 position. About 17% of Europeans are homozygous for this variant. This strongly predicts slow acetylator phenotype.

Key References

PMID: 22092036

Accuracy of various NAT2 SNP genotyping panels to infer acetylator phenotypes - rs1801280 in optimal 4-SNP panel

PMID: 16112301

Garcia-Closas et al. NAT2 slow acetylation and bladder cancer risk meta-analysis (OR 1.4 for smokers)

PMID: 25081676

Meta-analysis of NAT2 gene polymorphisms and cancer susceptibility