Research

Methylation & Detox

Folate metabolism, histamine processing, and phase I/II detoxification enzymes

This category covers the folate/methylation cycle (MTHFR, MTR, COMT, CBS), histamine breakdown enzymes (DAO, HNMT), acetylation speed (NAT2), nitric oxide production (NOS3), lactase persistence (LCT), and phase I/II detoxification enzymes (CYP1A1, CYP1B1, GSTs, NQO1, SOD2, GPX1). These pathways work together to process methylation, clear histamine, neutralize reactive intermediates, and defend against oxidative stress.

Genetic Variants (36)

rs1801133

(MTHFR C677T)

Key enzyme for converting folate to its active methylfolate form

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rs1801131

(MTHFR A1298C)

Second MTHFR variant affecting enzyme activity in the regulatory domain

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rs1051266

(SLC19A1 G80A (His27Arg))

Folate transporter — how well folate gets into your cells

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rs2236225

(MTHFD1 G1958A)

Folate processing enzyme — reduced stability increases choline need

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rs1801394

(MTRR A66G)

B12 recycling enzyme — regenerates active B12 for the methylation cycle

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rs1805087

(MTR A2756G)

Methionine synthase — uses B12 to convert homocysteine to methionine

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rs1544410

(VDR BsmI)

Vitamin D receptor — affects how well vitamin D activates cellular processes

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rs10741657

(CYP2R1 promoter variant)

Vitamin D activation — converts D3 to 25(OH)D in the liver

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rs7946

(PEMT Val175Met)

Phosphatidylcholine production — affects dietary choline requirements

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rs4680

(COMT Val158Met)

Dopamine/catecholamine breakdown — affects stress response and methyl donor tolerance

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rs234706

(CBS C699T)

Common synonymous variant in the CBS gene associated with reduced cardiovascular disease risk and enhanced response to folate supplementation

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rs1801181

(CBS A360A)

A synonymous variant in CBS affecting homocysteine metabolism and associated with modest changes in transsulfuration pathway activity

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rs567754

(BHMT BHMT-02)

Intronic variant in betaine-homocysteine methyltransferase gene associated with selenium levels but no known disease risk

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rs1979277

(SHMT1 C1420T)

Alters one-carbon metabolism and folate distribution; influences cancer risk, folate levels, and cardiovascular disease in combination with MTHFR variants

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rs819147

(AHCY)

Regulatory variant affecting S-adenosylhomocysteine hydrolase expression, influencing methylation cycle balance and SAH clearance

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rs2052129

(AOC1 (DAO) promoter variant)

Histamine breakdown in gut - reduced activity means dietary histamine accumulates

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rs10156191

(AOC1 (DAO) Thr16Met)

DAO structural variant affecting enzyme activity and histamine degradation

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rs1049793

(AOC1 (DAO) His645Asp)

DAO structural variant near the catalytic domain affecting histamine degradation

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rs1050891

(HNMT 3'UTR variant)

Histamine breakdown in blood and tissues - uses methyl groups from SAM

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rs11558538

(HNMT Thr105Ile)

HNMT structural variant - reduces enzyme stability and histamine clearance in tissues

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rs1799983

(NOS3 Glu298Asp)

Nitric oxide production - reduced activity increases cardiovascular risk and oxidative stress

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rs2070744

(NOS3 T-786C promoter)

NOS3 expression - controls how much eNOS enzyme is produced for nitric oxide synthesis

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rs1801280

(NAT2 I114T)

Phase II detoxification - acetylation of aromatic amines and certain medications

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rs1799930

(NAT2 R197Q)

Slow acetylator variant affecting Phase II detoxification capacity

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rs1208

(NAT2 R268K)

NAT2 acetylation speed tag SNP - marks rapid vs slow acetylator haplotypes

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rs4988235

(LCT -13910C>T)

Lactase persistence - ability to digest lactose (milk sugar) in adulthood

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rs4880

(SOD2 Val16Ala)

Primary mitochondrial antioxidant enzyme - variant reduces superoxide detoxification in mitochondria

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rs1050450

(GPX1 Pro198Leu)

Selenium-dependent antioxidant enzyme that neutralizes hydrogen peroxide; the Leu variant reduces enzyme activity and responsiveness to selenium

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rs1695

(GSTP1 Ile105Val)

Phase II detoxification enzyme that conjugates glutathione to carcinogens, drugs, and oxidative stress products; this variant alters the active site geometry, changing substrate specificity

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rs1138272

(GSTP1 Ala114Val)

Second functional variant in glutathione S-transferase Pi 1, reducing enzyme activity to ~80% of normal and defining key GSTP1 haplotypes that affect detoxification capacity and cancer susceptibility

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rs366631

(GSTM1 Tag SNP for gene deletion)

Tag SNP proxy for GSTM1 gene deletion status — the most common pharmacogenomic variant worldwide, eliminating a Phase II detoxification enzyme that conjugates glutathione to environmental carcinogens

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rs1800566

(NQO1 Pro187Ser (C609T))

Phase II detoxification enzyme that reduces quinones and recycles CoQ10 to its active ubiquinol form; variant causes near-complete loss of enzyme activity

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rs1048943

(CYP1A1 Ile462Val (*2C))

Phase I detoxification enzyme that activates polycyclic aromatic hydrocarbons and metabolizes estrogens; the Val variant increases catalytic activity, producing more reactive intermediates

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rs1056836

(CYP1B1 Leu432Val)

Phase I detoxification enzyme that hydroxylates estradiol to potentially genotoxic 4-hydroxyestradiol and activates environmental procarcinogens including PAHs

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rs1001179

(CAT -262C>T)

Catalase promoter variant affecting hydrogen peroxide clearance and antioxidants defense capacity

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rs71748309

(GSTT1 Null (Gene Deletion))

Complete deletion of the GSTT1 gene eliminating glutathione conjugation capacity for industrial solvents and certain carcinogens

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