Methylation & Detox
Folate metabolism, histamine processing, and phase I/II detoxification enzymes
This category covers the folate/methylation cycle (MTHFR, MTR, COMT, CBS), histamine breakdown enzymes (DAO, HNMT), acetylation speed (NAT2), nitric oxide production (NOS3), lactase persistence (LCT), and phase I/II detoxification enzymes (CYP1A1, CYP1B1, GSTs, NQO1, SOD2, GPX1). These pathways work together to process methylation, clear histamine, neutralize reactive intermediates, and defend against oxidative stress.
Genetic Variants (36)
rs1801133
(MTHFR C677T)Key enzyme for converting folate to its active methylfolate form
rs1801131
(MTHFR A1298C)Second MTHFR variant affecting enzyme activity in the regulatory domain
rs1051266
(SLC19A1 G80A (His27Arg))Folate transporter — how well folate gets into your cells
rs2236225
(MTHFD1 G1958A)Folate processing enzyme — reduced stability increases choline need
rs1801394
(MTRR A66G)B12 recycling enzyme — regenerates active B12 for the methylation cycle
rs1805087
(MTR A2756G)Methionine synthase — uses B12 to convert homocysteine to methionine
rs1544410
(VDR BsmI)Vitamin D receptor — affects how well vitamin D activates cellular processes
rs10741657
(CYP2R1 promoter variant)Vitamin D activation — converts D3 to 25(OH)D in the liver
rs7946
(PEMT Val175Met)Phosphatidylcholine production — affects dietary choline requirements
rs4680
(COMT Val158Met)Dopamine/catecholamine breakdown — affects stress response and methyl donor tolerance
rs234706
(CBS C699T)Common synonymous variant in the CBS gene associated with reduced cardiovascular disease risk and enhanced response to folate supplementation
rs1801181
(CBS A360A)A synonymous variant in CBS affecting homocysteine metabolism and associated with modest changes in transsulfuration pathway activity
rs567754
(BHMT BHMT-02)Intronic variant in betaine-homocysteine methyltransferase gene associated with selenium levels but no known disease risk
rs1979277
(SHMT1 C1420T)Alters one-carbon metabolism and folate distribution; influences cancer risk, folate levels, and cardiovascular disease in combination with MTHFR variants
rs819147
(AHCY)Regulatory variant affecting S-adenosylhomocysteine hydrolase expression, influencing methylation cycle balance and SAH clearance
rs2052129
(AOC1 (DAO) promoter variant)Histamine breakdown in gut - reduced activity means dietary histamine accumulates
rs10156191
(AOC1 (DAO) Thr16Met)DAO structural variant affecting enzyme activity and histamine degradation
rs1049793
(AOC1 (DAO) His645Asp)DAO structural variant near the catalytic domain affecting histamine degradation
rs1050891
(HNMT 3'UTR variant)Histamine breakdown in blood and tissues - uses methyl groups from SAM
rs11558538
(HNMT Thr105Ile)HNMT structural variant - reduces enzyme stability and histamine clearance in tissues
rs1799983
(NOS3 Glu298Asp)Nitric oxide production - reduced activity increases cardiovascular risk and oxidative stress
rs2070744
(NOS3 T-786C promoter)NOS3 expression - controls how much eNOS enzyme is produced for nitric oxide synthesis
rs1801280
(NAT2 I114T)Phase II detoxification - acetylation of aromatic amines and certain medications
rs1799930
(NAT2 R197Q)Slow acetylator variant affecting Phase II detoxification capacity
rs1208
(NAT2 R268K)NAT2 acetylation speed tag SNP - marks rapid vs slow acetylator haplotypes
rs4988235
(LCT -13910C>T)Lactase persistence - ability to digest lactose (milk sugar) in adulthood
rs4880
(SOD2 Val16Ala)Primary mitochondrial antioxidant enzyme - variant reduces superoxide detoxification in mitochondria
rs1050450
(GPX1 Pro198Leu)Selenium-dependent antioxidant enzyme that neutralizes hydrogen peroxide; the Leu variant reduces enzyme activity and responsiveness to selenium
rs1695
(GSTP1 Ile105Val)Phase II detoxification enzyme that conjugates glutathione to carcinogens, drugs, and oxidative stress products; this variant alters the active site geometry, changing substrate specificity
rs1138272
(GSTP1 Ala114Val)Second functional variant in glutathione S-transferase Pi 1, reducing enzyme activity to ~80% of normal and defining key GSTP1 haplotypes that affect detoxification capacity and cancer susceptibility
rs366631
(GSTM1 Tag SNP for gene deletion)Tag SNP proxy for GSTM1 gene deletion status — the most common pharmacogenomic variant worldwide, eliminating a Phase II detoxification enzyme that conjugates glutathione to environmental carcinogens
rs1800566
(NQO1 Pro187Ser (C609T))Phase II detoxification enzyme that reduces quinones and recycles CoQ10 to its active ubiquinol form; variant causes near-complete loss of enzyme activity
rs1048943
(CYP1A1 Ile462Val (*2C))Phase I detoxification enzyme that activates polycyclic aromatic hydrocarbons and metabolizes estrogens; the Val variant increases catalytic activity, producing more reactive intermediates
rs1056836
(CYP1B1 Leu432Val)Phase I detoxification enzyme that hydroxylates estradiol to potentially genotoxic 4-hydroxyestradiol and activates environmental procarcinogens including PAHs
rs1001179
(CAT -262C>T)Catalase promoter variant affecting hydrogen peroxide clearance and antioxidants defense capacity
rs71748309
(GSTT1 Null (Gene Deletion))Complete deletion of the GSTT1 gene eliminating glutathione conjugation capacity for industrial solvents and certain carcinogens