rs6133175 — SLC23A2
Intronic variant in the tissue vitamin C transporter SVCT2 — GG homozygotes carry ~24% higher plasma vitamin C levels than AA homozygotes
Details
- Gene
- SLC23A2
- Chromosome
- 20
- Risk allele
- A
- Consequence
- Intronic
- Inheritance
- Codominant
- Clinical
- Risk Factor
- Evidence
- Moderate
- Chip coverage
- v3 v4 v5
Population Frequency
Ancestry Frequencies
Related SNPs
Category
Nutrition & MetabolismSee your personal result for SLC23A2
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SLC23A2 rs6133175 — Your Tissue Vitamin C Transporter
Every cell in your body needs vitamin C, but not all cells are equal
in their ability to acquire it. Once dietary ascorbate crosses the
gut wall and enters the bloodstream, a second transporter system
distributes it into tissues where it is needed most — the brain,
adrenal glands, eyes, and metabolically active organs. The gene
SLC23A2 encodes
SVCT211 SVCT2
Sodium-dependent Vitamin C Transporter 2 — a high-affinity
transporter expressed in metabolically demanding tissues including
neurons, adrenal cortex cells, and the aqueous humor of the eye,
a high-affinity transporter that pulls ascorbate from the bloodstream
into these specialized tissues. The intronic variant rs6133175 sits
within SLC23A2 and, despite lying outside the protein-coding sequence,
influences circulating plasma vitamin C in a measurable way — with
the GG genotype associated with approximately 24% higher plasma
ascorbate than the common AA genotype.
The Mechanism
Unlike SLC23A1 (SVCT1), which handles intestinal absorption and renal reabsorption to maintain whole-body vitamin C homeostasis, SVCT2 operates in tissues with high metabolic demand. The brain accumulates vitamin C to concentrations roughly 10-fold higher than plasma — a feat achieved almost entirely by SVCT2 expressed on the blood-brain barrier and neuronal membranes. The adrenal glands similarly use SVCT2 to build the highest vitamin C concentration of any organ in the body, where ascorbate is required for cortisol and adrenaline synthesis.
The rs6133175 variant is an
intron variant22 intron variant
Located within a non-coding intervening sequence of
the gene; does not directly change the amino acid sequence but may
affect gene expression, splicing, or regulatory element activity
— its precise molecular mechanism has not been fully characterized.
The most likely explanations are altered
splicing efficiency33 splicing efficiency
The process by which intron sequences are
removed from pre-mRNA; intronic variants near splice sites can shift
the ratio of splice isoforms, changing how much functional protein
is made
or disruption of a transcriptional regulatory element within the
intron. The fact that it influences plasma vitamin C at all — despite
not changing the SVCT2 protein sequence — suggests it affects the
amount of transporter protein expressed rather than its function.
Because SVCT2 handles redistribution of ascorbate from plasma into tissues, a variant that increases SVCT2 expression or activity could lower plasma levels by pulling more vitamin C into cells, or raise plasma levels by improving renal reabsorption secondary effects. The net effect observed in the EPIC cohort is higher plasma vitamin C in GG homozygotes, though the direction of causality through tissue distribution remains to be mechanistically confirmed.
The Evidence
The primary evidence comes from a
nested case-control study in the European EPIC cohort44 nested case-control study in the European EPIC cohort
Duell EJ et al.
Vitamin C transporter gene (SLC23A1 and SLC23A2) polymorphisms, plasma
vitamin C levels, and gastric cancer risk in the EPIC cohort.
Genes Nutr, 2013
involving 365 gastric cancer cases and 1,284 matched controls from
10 European countries. Among 311 controls with complete genotyping
and plasma vitamin C data, genotype frequencies were AA 37%, AG 45%,
and GG 12%. In a recessive model adjusted for age, sex, country,
smoking, and season of blood draw, GG homozygotes had plasma vitamin C
24% higher than AA homozygotes (beta = 0.22, 95% CI: 0.029–0.40;
P = 0.02). The raw plasma values were AA 39.1, AG 39.4, and GG
45.2 umol/L — a clinically meaningful spread given that adequate
status is generally considered to be above 28 umol/L.
Importantly, both rs6133175 (SLC23A2) and rs33972313 (SLC23A1) independently predicted plasma vitamin C levels in multivariable models, suggesting the two genes tag non-overlapping mechanisms: SVCT1 controls gut absorption and renal reclamation, while SVCT2 variants apparently influence a separate step in vitamin C homeostasis.
A
Chinese Han population study55 Chinese Han population study
Hou H et al. Impact of SLC23A1 and
SLC23A2 Polymorphisms on the Risk for Preeclampsia in a Chinese Han
Population. J Nutr Sci Vitaminol (Tokyo), 2022
found significant genotypic frequency differences for rs6133175
between preeclampsia cases and controls. Under a recessive model,
the A allele (homozygous AA) was associated with protection against
preeclampsia (OR = 0.71, 95% CI: 0.55–0.92; P = 0.01), while
AG/GG genotypes showed elevated risk. This counterintuitive finding
— where the lower-vitamin-C genotype appears protective — may reflect
complex tissue-specific redox effects in pregnancy or confounding by
population-specific factors.
A
case-control study of chronic lymphocytic leukaemia66 case-control study of chronic lymphocytic leukaemia
Casabonne D et al.
Fruit and vegetable intake and vitamin C transporter gene (SLC23A2)
polymorphisms in chronic lymphocytic leukaemia. Eur J Nutr, 2017
found a log-additive association between the G allele and CLL risk
(OR = 1.19, 95% CI: 1.00–1.41; P = 0.05), independent of fruit and
vegetable intake.
Practical Implications
The key finding for most carriers is straightforward: AA homozygotes — about 50% of the global population — run plasma vitamin C levels roughly 6 umol/L lower than GG homozygotes on the same diet. This is a consistent genetic baseline effect that dietary choices can compensate for, but cannot eliminate. If your dietary vitamin C intake is adequate (above 75–90 mg/day), the genotype effect is unlikely to push you into frank deficiency. But if your diet is limited in vitamin C-rich foods — especially common in winter months or during food restriction — the AA genotype adds a structural disadvantage.
The G allele is notably more common in East Asian populations (~64%) than in Europeans (~37%), and quite rare in African populations (~17%). This means the GG "high-ascorbate" genotype affects about 40% of East Asians compared to roughly 14% of Europeans.
Interactions
This variant operates through a different biological step than
rs3397231377 rs33972313
SLC23A1 Val264Met — reduces intestinal and renal
vitamin C transport capacity in SLC23A1 (SVCT1). The Duell 2013
EPIC study demonstrated that both variants independently predicted
plasma vitamin C in the same multivariable model, indicating additive
rather than redundant effects. A person carrying the reduced-function
SLC23A1 variant (rs33972313 CT/TT) alongside the low-vitamin-C SLC23A2
genotype (rs6133175 AA) faces a dual disadvantage: both absorbing less
vitamin C from food and having less favorable tissue distribution.
The closely located variant
rs605300588 rs6053005
SLC23A2 intronic variant, ~66 kb downstream of rs6133175,
also associated with 24% higher plasma vitamin C in TT homozygotes
vs CC homozygotes in the same EPIC cohort in SLC23A2 (approximately
66 kb downstream within the same gene) showed nearly identical effects
in the EPIC cohort (TT: +24%, beta = 0.21, 95% CI: 0.058–0.37,
P = 0.007). These two SLC23A2 variants likely tag the same haplotype
block and may not represent fully independent signals.
Nutrient Interactions
Genotype Interpretations
What each possible genotype means for this variant:
GG genotype — plasma vitamin C ~24% higher than AA carriers on the same diet
In the Duell 2013 EPIC analysis (n=311 controls), GG homozygotes had a mean plasma vitamin C of 45.2 umol/L versus 39.1 umol/L for AA homozygotes — a 15.6% absolute difference that achieved statistical significance under the recessive model (beta = 0.22, 95% CI: 0.029–0.40; P = 0.02). This effect was independent of dietary fruit and vegetable intake, confirming a genetic rather than behavioral origin.
The elevated baseline provides a wider buffer before plasma levels fall into the suboptimal range (below 28 umol/L). For most GG carriers, standard dietary vitamin C recommendations (75 mg/day for women, 90 mg/day for men) are sufficient for optimal ascorbate status.
One note of context: a preeclampsia study in a Chinese Han population found that AG/GG genotypes were associated with slightly elevated preeclampsia risk compared to AA, suggesting the picture during pregnancy may be more complex. This does not alter general recommendations but warrants monitoring during pregnancy.
One G copy — plasma vitamin C between the AA and GG extremes
Under the recessive model that best fit the EPIC data, the AG genotype clusters with AA rather than GG in terms of plasma vitamin C. This means heterozygotes do not show a clear intermediate effect — the G allele appears to exert its vitamin C-elevating effect primarily in the homozygous GG state. The mean plasma values in EPIC were AA 39.1, AG 39.4, GG 45.2 umol/L, confirming the recessive pattern.
As with AA, adequate dietary intake of vitamin C keeps plasma levels well within normal reference ranges for most AG carriers. The functional distinction from AA is minimal based on available data.
Common genotype — plasma vitamin C runs ~24% lower than GG carriers
The A allele at rs6133175 represents the ancestral, common state of this variant. Despite being the "common" genotype, it is associated with lower plasma vitamin C compared to GG homozygotes in a recessive genetic model (beta = 0.22 per GG vs AA comparison, P = 0.02; Duell 2013, EPIC cohort). The difference in absolute terms was approximately 6 umol/L.
For context, the general population range for adequate vitamin C is approximately 28–85 umol/L, with frank deficiency below 11 umol/L and optimal antioxidant status often cited above 50 umol/L. An AA genotype with mean values around 39 umol/L sits comfortably in the adequate range, but the buffer before hitting suboptimal territory is smaller than for GG carriers.
In populations with lower dietary vitamin C intake, or in physiological states that increase vitamin C turnover (infection, inflammation, smoking, pregnancy), the genotype effect becomes more clinically relevant. Smokers independently require an extra 35 mg/day of vitamin C, and the AA genotype narrows the safety margin further.
Key References
Duell et al. 2013 — EPIC cohort study identifying rs6133175 as one of four SNPs predicting plasma vitamin C; GG homozygotes had +24% higher plasma ascorbate (beta=0.22, 95% CI 0.029-0.40, P=0.02, recessive model, n=311 controls)
Hou et al. 2022 — Chinese Han cohort showing rs6133175 AG/GG genotypes associated with preeclampsia risk (OR=0.71, 95% CI 0.55-0.92 for A allele protective effect under recessive model)
Casabonne et al. 2017 — rs6133175 A>G associated with chronic lymphocytic leukaemia risk (OR=1.19, 95% CI 1.00-1.41, P=0.05) in interaction with fruit/vegetable intake