rs7041 — GC Asp432Glu
Vitamin D binding protein variant that determines VDBP isoform, affecting vitamin D transport, bioavailability, and supplementation response
Details
- Gene
- GC
- Chromosome
- 4
- Risk allele
- A
- Protein change
- p.Asp432Glu
- Consequence
- Missense
- Inheritance
- Codominant
- Clinical
- Risk Factor
- Evidence
- Strong
- Chip coverage
- v3 v4 v5
Population Frequency
Ancestry Frequencies
Related SNPs
Category
Nutrition & MetabolismVitamin D Binding Protein — The Carrier That Shapes Your Vitamin D Status
Vitamin D travels through your bloodstream bound to a carrier protein called
VDBP11 VDBP
Vitamin D binding protein, also known as group-specific component (GC), carries approximately 85-90% of circulating 25(OH)D and 85% of 1,25(OH)2D in the blood
(vitamin D binding protein). Roughly 85-90% of the vitamin D in your blood is
bound to VDBP, making it the single largest determinant of how vitamin D is
transported to tissues, how long it remains in circulation, and how much is
available for cellular uptake. The rs7041 variant in the GC gene changes a
single amino acid in this carrier protein, creating isoforms with different
binding properties that measurably affect your vitamin D levels.
The Mechanism
The rs7041 variant produces a missense change22 missense change
A missense variant changes one amino acid to another in the protein sequence
at position 432 of the VDBP protein: aspartic acid (Asp) in the reference form
and glutamic acid (Glu) in the alternate form. Together with a second variant
in the same gene (rs458833 rs4588
The companion GC variant at codon 436, where Thr defines Gc1 and Lys defines Gc2),
rs7041 defines the three major VDBP isoforms that differ in binding affinity
and glycosylation:
- Gc1f (rs7041-A + rs4588-C): highest binding affinity for 25(OH)D
- Gc1s (rs7041-C + rs4588-C): intermediate binding affinity
- Gc2 (rs7041-A + rs4588-A): lowest binding affinity
The Gc1f isoform (A allele at rs7041) binds vitamin D metabolites most tightly.
This means more total vitamin D is protein-bound and less circulates as
free 25(OH)D44 free 25(OH)D
The unbound fraction of vitamin D that can enter cells directly without receptor-mediated uptake; represents about 0.03% of total circulating 25(OH)D.
Paradoxically, individuals with the highest-affinity carrier (AA genotype) tend
to have the lowest levels of free, bioavailable vitamin D despite potentially
adequate total levels.
The isoforms also differ in glycosylation patterns that affect conversion to
Gc-MAF55 Gc-MAF
GC protein-derived macrophage activating factor, an immune modulator produced by enzymatic modification of VDBP that activates macrophages.
Gc1 isoforms are more efficiently converted to Gc-MAF than Gc2, with
implications for innate immune function.
The Evidence
A landmark GWAS of 4,501 Europeans66 landmark GWAS of 4,501 Europeans
Ahn J et al. Genome-wide association study of circulating vitamin D levels. Hum Mol Genet, 2010
identified rs7041 as a genome-wide significant determinant of circulating
25(OH)D concentrations (P = 4.1 x 10-22). A subsequent
GWAS focused on VDBP levels77 GWAS focused on VDBP levels
Moy KA et al. Genome-wide association study of circulating vitamin D-binding protein. Am J Clin Nutr, 2014
found even stronger association: mean serum DBP concentrations were 7,335,
5,149, and 3,152 nmol/L for individuals carrying 0, 1, and 2 copies of the
minor allele respectively (P = 1.42 x 10-246).
A study in women across reproductive states88 study in women across reproductive states
Ganz AB et al. Vitamin D binding protein rs7041 genotype alters vitamin D metabolism in pregnant women. FASEB J, 2018
found that AA (TT on coding strand) carriers had 25(OH)D levels at 80% of CC
(GG) carriers (P = 0.05), but paradoxically had 2.5 times higher free 25(OH)D
(P < 0.0001). This reflects lower VDBP concentrations with the A allele,
resulting in less total binding but more unbound vitamin D available for
cellular uptake.
A supplementation study in 234 vitamin D-deficient adults99 supplementation study in 234 vitamin D-deficient adults
Al-Daghri NM et al. Efficacy of vitamin D supplementation according to vitamin D-binding protein polymorphisms. Nutrition, 2019
found that homozygous A allele carriers were 6.2 times more likely to remain
deficient after supplementation, and heterozygotes 4.2 times more likely,
compared to CC homozygotes (P < 0.001). This makes rs7041 one of the
strongest genetic predictors of vitamin D supplementation response.
In a cohort of 414 smokers1010 cohort of 414 smokers
Janssens W et al. Vitamin D deficiency is highly prevalent in COPD and correlates with variants in the vitamin D-binding gene. Thorax, 2010,
AA homozygotes had a 25% reduction in 25(OH)D levels and an increased risk
for COPD (OR 2.11, 95% CI 1.20-3.71, P = 0.009).
Practical Implications
The key insight from rs7041 is the distinction between total and free vitamin D. Standard blood tests measure total 25(OH)D, which is heavily influenced by VDBP levels. If you carry the A allele, your total vitamin D may appear low on standard testing even when your free (bioavailable) vitamin D is adequate. This matters because clinical decisions about supplementation are usually based on total 25(OH)D.
AA carriers should consider testing both total and free 25(OH)D if available, may need higher doses to reach standard target levels on total 25(OH)D, and should take vitamin D3 with fat-containing meals for optimal absorption. Consistent daily dosing (e.g. 2,000-4,000 IU daily) may work better than large intermittent doses for genotypes with altered VDBP kinetics.
Interactions
rs7041 interacts directly with rs4588 in the same gene to determine the three VDBP isoforms (Gc1f, Gc1s, Gc2). The combination of both variants provides more information than either alone. rs7041-A with rs4588-A creates the Gc2 isoform (lowest binding affinity), while rs7041-A with rs4588-C creates Gc1f (highest affinity). This means the same rs7041 genotype can have different functional consequences depending on rs4588 status.
rs7041 also interacts with VDR (rs1544410) and CYP2R1 (rs10741657). If VDBP transport is impaired (rs7041 AA) alongside reduced vitamin D activation (CYP2R1 AA) or reduced receptor sensitivity (VDR TT), the combined effect on vitamin D status is compounded. These multi-gene interactions are addressed in compound implications when all relevant genotypes are present.
Nutrient Interactions
Genotype Interpretations
What each possible genotype means for this variant:
Standard VDBP isoform — normal vitamin D transport and supplementation response
The CC genotype produces the Gc1s VDBP isoform, which has intermediate binding affinity for vitamin D metabolites. You have the highest serum VDBP concentrations among the three genotype groups (mean ~7,335 nmol/L in one GWAS), meaning more of your circulating vitamin D is protein-bound and appears on standard blood tests.
This genotype is the reference group in supplementation studies. You respond normally to standard vitamin D3 doses and your total 25(OH)D levels accurately reflect your functional vitamin D status.
One high-affinity VDBP copy — moderately reduced total vitamin D levels
With one copy of each allele, you produce a mixture of VDBP isoforms. Your serum VDBP concentration is intermediate (approximately 5,149 nmol/L vs 7,335 for CC and 3,152 for AA in one GWAS). Total 25(OH)D levels are about 85% of CC carriers.
In the Al-Daghri et al. supplementation study, heterozygotes were 4.2 times more likely to be non-responders to vitamin D supplementation compared to CC carriers, indicating a meaningful but less pronounced effect than the AA genotype.
Highest-affinity VDBP — lower total vitamin D, may need higher supplementation doses
The AA genotype produces the Gc1f protein isoform, which has the highest binding affinity for 25(OH)D among the three major VDBP variants. A GWAS found that each copy of the A allele reduces serum VDBP by roughly 30% (mean concentrations: 7,335 nmol/L with zero copies vs 3,152 nmol/L with two copies). Despite lower total 25(OH)D, free vitamin D is approximately 2.5 times higher in AA carriers compared to CC carriers.
This genotype has clinical implications for vitamin D supplementation. In a study of 234 vitamin D-deficient adults, AA carriers were 6.2 times more likely to remain below 50 nmol/L total 25(OH)D after supplementation. However, this may partly reflect the total/free vitamin D paradox rather than true functional deficiency.
The Gc1f isoform is also the most efficiently converted to Gc-MAF (macrophage activating factor), which may confer advantages for innate immune function.
Key References
Ahn et al. 2010 — GWAS of 4,501 Europeans identifying rs7041 as genome-wide significant determinant of 25(OH)D levels (P=4.1x10^-22)
Moy et al. 2014 — GWAS of circulating DBP showing rs7041 as strongest determinant of serum VDBP (P=1.42x10^-246)
Ganz et al. 2018 — rs7041 genotype alters vitamin D metabolism in pregnant women; TT carriers have 80% of GG 25(OH)D but 2.5x higher free vitamin D
Al-Daghri et al. 2019 — rs7041 minor allele carriers 3.7x more likely to be vitamin D supplementation non-responders
Janssens et al. 2010 — rs7041 TT homozygotes have 25% lower vitamin D and increased COPD risk (OR 2.11, 95% CI 1.20-3.71)
Rozmus et al. 2022 — comprehensive review of rs7041 and rs4588 polymorphisms in VDBP gene and disease risk