rs763625913 — LDLR Q770* (c.2308C>T)
Rare pathogenic nonsense variant in the LDL receptor gene that abolishes receptor function, causing receptor-negative familial hypercholesterolemia with severely elevated LDL-C and high premature coronary artery disease risk
Details
- Gene
- LDLR
- Chromosome
- 19
- Risk allele
- T
- Clinical
- Pathogenic
- Evidence
- Established
Population Frequency
Category
Atherogenic LipoproteinsSee your personal result for LDLR
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LDLR Q770* — When the LDL Receptor Stops Working
The LDLR gene11 LDLR gene
encodes the LDL receptor, a cell-surface protein that captures and removes
LDL cholesterol from the bloodstream by binding apolipoprotein B-100
on LDL particles and shuttling them into cells for degradation. Without functional LDL receptors,
circulating LDL accumulates relentlessly from birth — a condition called
familial hypercholesterolemia22 familial hypercholesterolemia
the most common serious monogenic disorder, affecting ~1 in 250 people
globally in its heterozygous form.
The rs763625913 variant (c.2308C>T) creates a premature stop codon at position 770 of the LDLR protein,
producing a truncated, non-functional receptor. This is a
receptor-negative mutation33 receptor-negative mutation
the receptor is either not made or completely unable to bind LDL,
the most severe functional class of LDLR variants. ClinVar classifies it Pathogenic for
hypercholesterolemia, familial type 144 hypercholesterolemia, familial type 1
the autosomal dominant form caused by LDLR mutations.
The Mechanism
A nonsense mutation55 nonsense mutation
a single DNA base change that replaces an amino acid codon with a stop codon,
terminating protein synthesis prematurely
at codon 770 (Gln→stop) removes the last 89 amino acids of the mature LDLR protein, which include
critical domains required for receptor recycling. The truncated receptor cannot be properly
expressed on the hepatocyte surface. With one defective copy (heterozygous state), approximately
half the normal number of LDL receptors are present, reducing LDL clearance by ~50% and
causing LDL-C to accumulate to 190–300 mg/dL66 LDL-C to accumulate to 190–300 mg/dL
roughly 2–3× the normal range
from childhood onward. The
endogenous cholesterol synthesis pathway77 endogenous cholesterol synthesis pathway
the liver continues producing cholesterol but cannot
recycle the LDL fraction efficiently through the receptor
pathway, compounding the problem.
The Evidence
Pathogenic LDLR nonsense and frameshift variants — the class to which Q770* belongs — are classified
as receptor-negative mutations88 receptor-negative mutations
producing no functional receptor activity.
Bertolini et al. in a multicenter Italian cohort of 282 FH patients99 Bertolini et al. in a multicenter Italian cohort of 282 FH patients
clustering mutations by regional
ancestry and functional class showed that receptor-negative
carriers had 18% higher LDL-C, 2.6-fold more coronary artery disease, and 2-fold more tendon xanthomas
than receptor-defective carriers — confirming that complete receptor abolition is the most severe
functional consequence of LDLR mutation.
Without treatment, untreated heterozygous FH carries approximately
50% cumulative coronary event risk by age 50 in men and 30% by age 60 in women1010 50% cumulative coronary event risk by age 50 in men and 30% by age 60 in women
based on natural history
registry data from the pre-statin era. The overall
coronary disease excess is estimated at
up to 13-fold compared to the general population1111 up to 13-fold compared to the general population
European Atherosclerosis Society consensus statement on FH.
Critically, this risk is dramatically modifiable: high-intensity statin therapy initiated early
reduces cardiovascular events by 50–80% and narrows the life expectancy gap with unaffected relatives.
This variant is extremely rare (one observation across 595,462 gnomAD exome alleles), consistent with strong purifying selection — individuals carrying it face severely elevated cardiovascular risk from birth, and reproductive fitness is reduced. Most carriers identified in clinical practice are ascertained through cascade screening after a proband is diagnosed with premature CAD or markedly elevated LDL-C.
Practical Actions
Carrying this variant is a medical diagnosis equivalent to clinically confirmed FH. The first
priority is confirming the lipid phenotype with a fasting lipid panel — LDL-C is typically
190–300 mg/dL in untreated heterozygotes. High-intensity statin therapy (atorvastatin 40–80 mg or
rosuvastatin 20–40 mg daily) should be initiated regardless of age in adults, and as early as age 8–10
in affected children. The LDL-C target is <100 mg/dL for most carriers, or <70 mg/dL if coronary
artery disease is already present. Because receptor-negative variants produce a more severe
phenotype than receptor-defective variants, reaching these targets often requires combination
therapy: high-intensity statin + ezetimibe 10 mg, and frequently a
PCSK9 inhibitor1212 PCSK9 inhibitor
evolocumab or alirocumab, which increase LDL receptor expression from the remaining
functional allele by preventing receptor degradation.
Because FH follows autosomal dominant inheritance, every first-degree relative has a 50% chance of carrying this variant. Cascade genetic testing or LDL-C screening in parents, siblings, and children is recommended as soon as the proband is identified — early intervention in childhood prevents decades of LDL-C-driven atherosclerosis.
Interactions
This variant interacts with other cholesterol pathway variants. Carriers who also carry a
PCSK9 gain-of-function variant1313 PCSK9 gain-of-function variant
e.g. rs28942080 D374Y face
compounded LDL receptor dysfunction: PCSK9 rapidly degrades the residual functional LDLR
protein, making pharmacologic PCSK9 inhibition especially important. Conversely, carriers of
PCSK9 loss-of-function variants1414 PCSK9 loss-of-function variants
such as rs28362261 Y142X
may show attenuated LDL elevation even with one defective LDLR allele, because more of the
functional receptor is preserved.
Lifestyle factors modify penetrance: obesity, insulin resistance, and hypothyroidism all further impair LDL clearance and worsen the phenotype, while intensive dietary fat restriction (saturated fat below 7% of calories) can modestly reduce LDL-C by 10–15% on top of pharmacotherapy. These lifestyle modifications do not substitute for statins in this context but can assist in reaching LDL targets.
Genotype Interpretations
What each possible genotype means for this variant:
No copy of this pathogenic LDLR nonsense variant
You carry two copies of the common C allele at rs763625913. This means you do not carry the Q770* pathogenic nonsense variant in the LDLR gene. Your LDL receptor gene is unaffected by this specific variant, and you have no elevated familial hypercholesterolemia risk attributable to it. The vast majority of people worldwide share this genotype — this variant is observed in fewer than 1 in 200,000 alleles in gnomAD.
Carrier of a pathogenic LDLR nonsense variant causing receptor-negative familial hypercholesterolemia
The c.2308C>T nonsense mutation creates a premature stop codon at amino acid position 770 (Gln→stop, abbreviated Q770*). This truncates the last 89 amino acids of the mature LDLR protein, ablating the receptor's ability to reach the hepatocyte surface and clear LDL from the circulation. With one functional and one defective LDLR allele, hepatocytes express approximately half the normal LDL receptor density. The result is impaired LDL clearance from childhood, leading to progressive accumulation of LDL-C in the circulation and in arterial walls.
Receptor-negative mutations like Q770* carry a more severe phenotype than receptor-defective variants. In a large Italian FH cohort, carriers of receptor-negative mutations had 18% higher LDL-C, 2.6-fold more coronary artery disease events, and 2-fold higher rates of tendon xanthomas compared to receptor-defective mutation carriers, even after adjusting for LDL-C levels — suggesting the complete absence of LDL receptor activity has consequences beyond simple cholesterol accumulation.
Statin therapy is the cornerstone of management: high-intensity statins (atorvastatin 40–80 mg or rosuvastatin 20–40 mg) typically reduce LDL-C by 50–60%. Most carriers of receptor-negative variants require combination therapy — adding ezetimibe 10 mg (further 15–20% reduction) and often a PCSK9 inhibitor (evolocumab or alirocumab, further 50–60% reduction) to reach guideline LDL targets. PCSK9 inhibitors are particularly rational here: they prevent degradation of the residual functional LDLR allele, maximizing activity of your one working receptor copy.
Because FH follows autosomal dominant inheritance, each first-degree relative has a 50% chance of carrying this same variant. Cascade screening of parents, siblings, and children is a public health imperative: identifying affected relatives in childhood and initiating early statin therapy prevents decades of atherosclerosis progression.
Two copies of this pathogenic LDLR nonsense variant — consistent with homozygous familial hypercholesterolemia
Homozygous LDLR nonsense mutations abolish LDL receptor function entirely. Standard statin therapy has limited efficacy in true receptor-negative homozygotes because statins work partly by upregulating LDLR expression — if there are no functional receptors to upregulate, the benefit is markedly reduced. Effective options for receptor-negative HoFH include lomitapide (an MTP inhibitor that reduces hepatic VLDL production, lowering LDL by 40–50% regardless of LDL receptor status), evinacumab (an ANGPTL3 inhibitor that lowers LDL through an LDLR-independent pathway), and lipoprotein apheresis (physical removal of LDL-containing particles every 1–2 weeks, reducing LDL by 60–75%).
In practice, most TT calls at this position should be verified carefully — genotyping errors, gene conversion artifacts, or sample contamination can produce spurious homozygous calls at ultra-rare sites. If the call is confirmed on repeat or by orthogonal sequencing, this is a pediatric cardiology and metabolism emergency.