rs10490924 — ARMS2 A69S

ARMS2 A69S — The Second Strongest Genetic Risk Factor for Macular Degeneration

Age-related macular degeneration (AMD) is the leading cause of irreversible blindness¹¹ leading cause of irreversible blindness
AMD affects central vision, making it difficult to read, drive, or recognize faces in people over 65 in developed countries. The ARMS2 gene produces a protein found in retinal pigment epithelium cells and immune cells²² retinal pigment epithelium cells and immune cells
These cells clear cellular debris and protect the retina from oxidative stress, particularly under oxidative stress. The A69S variant (rs10490924) is the second strongest genetic risk factor for AMD after complement factor H (CFH), with the T allele increasing risk substantially.

The Mechanism

The rs10490924 variant changes a single DNA letter from G to T in exon 1 of the ARMS2 gene. This missense mutation converts alanine to serine³³ missense mutation converts alanine to serine
The amino acid change from Ala→Ser at position 69 alters protein structure at position 69 of the ARMS2 protein. The variant is in strong linkage disequilibrium with an insertion-deletion mutation⁴⁴ linkage disequilibrium with an insertion-deletion mutation
del443ins54 in the 3' UTR removes the polyadenylation signal, causing mRNA instability in the 3' untranslated region that destabilizes mRNA.

Research using CRISPR gene editing in patient-derived retinal cells⁵⁵ CRISPR gene editing in patient-derived retinal cells
Study isolated rs10490924 effects from tightly linked variants using iPSC-derived RPE cells demonstrated that rs10490924 specifically increases oxidative stress in retinal pigment epithelium (RPE) cells. The T allele reduces expression of superoxide dismutase 2 (SOD2)⁶⁶ superoxide dismutase 2 (SOD2)
Mitochondrial enzyme that converts harmful superoxide radicals to less reactive hydrogen peroxide, a critical mitochondrial antioxidant enzyme. This leads to accumulation of reactive oxygen species (ROS) and oxidative damage in aging retinal cells.

Importantly, individuals homozygous for the TT genotype show complete absence⁷⁷ homozygous for the TT genotype show complete absence
ARMS2 protein undetectable in monocytes and microglia from TT homozygotes of ARMS2 protein in their immune cells. The normal ARMS2 protein functions as a complement activator that binds dying cells⁸⁸ complement activator that binds dying cells
Recruits properdin to enhance C3b opsonization for phagocytosis, helping clear cellular debris through the complement system. Without functional ARMS2, cellular debris and damaged proteins accumulate on Bruch's membrane⁹⁹ damaged proteins accumulate on Bruch's membrane
The extracellular matrix between RPE and choroid blood supply, forming drusen deposits characteristic of AMD.

The Evidence

Multiple large-scale studies have quantified AMD risk by ARMS2 genotype. The European Eye Study of 4,276 participants¹⁰¹⁰ European Eye Study of 4,276 participants
Population-based study across 7 European countries found that TT homozygotes had a 10-fold increased risk of late AMD compared to GG carriers (OR 10.0, p<3×10⁻²⁰). Even GT heterozygotes showed substantially elevated risk.

The Beaver Dam Eye Study followed 4,282 people¹¹¹¹ Beaver Dam Eye Study followed 4,282 people
20-year longitudinal study with genetic and phenotype data for 20 years, providing lifetime risk estimates. By age 80, individuals with 3-4 risk alleles in CFH and ARMS2 combined had a 15.3% cumulative risk of late AMD, compared to only 1.4% in those with 0-1 risk alleles. The ARMS2 TT genotype was present in only 4.7% of the population but conferred substantial risk.

A meta-analysis pooling data from multiple populations¹²¹² meta-analysis pooling data from multiple populations
Analysis included 6,676 neovascular AMD cases and 7,668 controls showed TT homozygotes had an 8.6-fold increased risk of AMD compared to GG (OR 8.57, 95% CI 6.91-10.64), while GT heterozygotes had a 2.4-fold increase (OR 2.35, 95% CI 2.01-2.75). The effect was consistent across European, Asian, and Middle Eastern populations, though the CFH Y402H variant shows ethnic variation¹³¹³ CFH Y402H variant shows ethnic variation
Common in Europeans but rare in East Asians, where CFH I62V is more relevant.

Importantly, the ARMS2 risk appears strongest for earlier disease onset¹⁴¹⁴ ARMS2 risk appears strongest for earlier disease onset
Homozygous carriers develop late AMD 9.6 years earlier than non-risk carriers. Carriers of the risk haplotype are diagnosed with late AMD nearly a decade earlier on average, and the variant particularly increases risk of choroidal neovascularization (the "wet" form of AMD).

Practical Implications

While you cannot change your ARMS2 genotype, research from the Age-Related Eye Disease Study 2 (AREDS2)¹⁵¹⁵ Age-Related Eye Disease Study 2 (AREDS2)
Randomized trial of 4,203 participants with intermediate AMD provides clear evidence that nutritional supplementation can slow AMD progression. The AREDS2 formula—containing vitamin C (500 mg), vitamin E (400 IU), lutein (10 mg), zeaxanthin (2 mg), zinc (25-80 mg), and copper (2 mg)—reduced progression to advanced AMD by approximately 25% over 5 years in people with intermediate AMD.

The 10-year follow-up showed that lutein and zeaxanthin were more protective than beta-carotene¹⁶¹⁶ lutein and zeaxanthin were more protective than beta-carotene
Direct comparison showed 15% lower late AMD risk with lutein/zeaxanthin vs beta-carotene, with those taking lutein/zeaxanthin showing an 18% lower risk of progression compared to beta-carotene. Importantly, genetic testing adds little to risk assessment—AREDS2 analysis confirmed that supplements benefit all genotypes equally¹⁷¹⁷ supplements benefit all genotypes equally
No significant interaction between ARMS2/CFH genotype and supplement efficacy, though individuals with the lowest dietary intake of lutein and zeaxanthin benefited most (26% risk reduction).

Beyond supplements, environmental factors interact with ARMS2 genetics. Smoking dramatically amplifies genetic risk¹⁸¹⁸ Smoking dramatically amplifies genetic risk
ARMS2 TT smokers have especially high AMD risk; interaction p=0.001, particularly for TT carriers. The interaction is so strong that the American Academy of Ophthalmology recommends smoking cessation as the single most important modifiable risk factor for AMD.

Regular monitoring is crucial for at-risk individuals. The Amsler grid test can detect early changes¹⁹¹⁹ Amsler grid test can detect early changes
Simple at-home test using a grid pattern to detect distortion in central vision in central vision, and comprehensive dilated eye exams can identify drusen deposits and pigmentary changes before vision loss occurs. Early detection of wet AMD enables prompt treatment with anti-VEGF injections²⁰²⁰ anti-VEGF injections
Drugs like ranibizumab and aflibercept that block abnormal blood vessel growth, which can preserve vision if started early.

Interactions

The ARMS2 A69S variant shows important interactions with other AMD risk genes, particularly CFH Y402H (rs1061170). Individuals who are homozygous for both high-risk genotypes (ARMS2 TT and CFH CC) face especially high AMD risk. The Beaver Dam study found those doubly homozygous²¹²¹ Beaver Dam study found those doubly homozygous
Carrying 4 risk alleles across CFH and ARMS2 had an odds ratio of 62.3 (95% CI 16-242) for late AMD, with p-values for trend reaching 1×10⁻²⁶.

This compound risk is clinically meaningful. While ARMS2 and CFH are on different chromosomes and segregate independently, their combined effect is multiplicative rather than merely additive. For individuals carrying both high-risk genotypes, cumulative lifetime risk of late AMD by age 80 approaches 27%, compared to under 2% for those with no risk alleles. Such individuals warrant especially aggressive monitoring, early AREDS2 supplementation, and lifestyle modification including strict smoking avoidance.

The mechanisms appear complementary: ARMS2 deficiency impairs complement-mediated clearance of cellular debris, while CFH variants reduce regulation of complement activation. Together, these create a "perfect storm" of inadequate debris clearance and excessive inflammation, accelerating drusen formation and RPE dysfunction.