rs1064793792 — SERPING1
Frameshift deletion in SERPING1 eliminating C1-inhibitor function — causes hereditary angioedema Type I with recurrent life-threatening swelling attacks
Details
- Gene
- SERPING1
- Chromosome
- 11
- Risk allele
- D
- Clinical
- Pathogenic
- Evidence
- Established
Population Frequency
Tags
See your personal result for SERPING1
Upload your DNA data to find out which genotype you carry and what it means for you.
Upload your DNA dataWorks with 23andMe, AncestryDNA, and other DNA test exports. Results in under 60 seconds.
SERPING1 c.856del — A Frameshift That Silences C1-Inhibitor
The SERPING1 gene encodes C1-inhibitor (C1-INH)11 C1-inhibitor (C1-INH)
Serpin family G member 1 — a serine
protease inhibitor that circulates in the blood and is the primary brake on the complement
and contact activation pathways, the body's
frontline inflammatory response systems. C1-INH keeps these systems from running
uncontrolled. When C1-INH is absent or non-functional, the contact activation pathway
generates bradykinin — a potent peptide that opens blood vessel walls and drives fluid
into surrounding tissues. The result is hereditary angioedema (HAE): unpredictable,
recurrent episodes of severe swelling affecting the skin, gut, and airway.
The c.856del variant removes a single cytosine nucleotide at position 856 of the SERPING1
coding sequence, causing a frameshift that alters every amino acid from position 286
onward and almost certainly triggers nonsense-mediated mRNA decay — destroying the
transcript and producing no C1-INH protein from that allele. This is the molecular
signature of HAE Type I, the most common form. HAE affects approximately
1 in 50,000 people globally22 1 in 50,000 people globally
Fisch et al. 2025 systematic review; prevalence 0.13–1.6
per 100,000 across regions, with no
significant difference between ancestries.
The Mechanism
C1-INH is the dominant inhibitor of factor XIIa and plasma kallikrein33 factor XIIa and plasma kallikrein
the two key
enzymes of the contact activation pathway that ultimately produce bradykinin from
kininogen as well as complement proteases
C1r and C1s. When one SERPING1 allele carries a frameshift, circulating C1-INH levels
fall to approximately 30–50% of normal — insufficient to fully suppress kallikrein activity.
Bradykinin surges drive episodes of submucosal and subcutaneous edema44 submucosal and subcutaneous edema
Non-pitting
swelling in the deep dermis and submucosa, not at the skin surface — which is why
antihistamines and corticosteroids, which target mast-cell-driven superficial edema,
are ineffective in HAE. Attacks commonly
affect the face, hands, feet, genitalia, and gastrointestinal tract (abdominal pain
mimicking a surgical emergency), and the larynx — where swelling can obstruct the airway
within hours.
HAE follows autosomal dominant inheritance55 autosomal dominant inheritance
One mutant allele is sufficient to cause
disease — the remaining functional allele cannot compensate for the 50% reduction in
C1-INH. Each child of an affected parent has a 50% chance of inheriting the mutation.
Even first-degree relatives with no personal history of swelling should be tested.
De novo mutations occur in approximately 20–25% of cases, so a negative family history
does not rule out the diagnosis.
The Evidence
The mortality data from HAE are stark. A landmark study by Bork et al.66 Bork et al.
Journal of
Allergy and Clinical Immunology, 2012 — 728 patients across 182 families
found that 70 of 214 deceased patients died from asphyxiation during laryngeal attacks.
Among those who died from asphyxiation, 63 had never received a diagnosis of HAE —
they lived on average 31 years shorter than HAE patients who died from other causes.
The systematic review by Guan et al.77 Guan et al.
Orphanet Journal of Rare Diseases, 2024 —
65 studies, 10,310 patients quantified
the overall asphyxiation mortality risk at 8.6%, with a mean diagnostic delay of
3.9 to 26 years. This diagnostic gap is where most preventable deaths occur.
The mutation spectrum of SERPING1 is broad. A Spanish cohort study by López-Lera et al.88 López-Lera et al.
Molecular Immunology, 2011 — 59 families
identified 52 distinct mutations, of which 15 (29%) were frameshifts. Frameshift mutations
virtually always abolish protein production entirely (Type I HAE), in contrast to some
missense mutations that allow secretion of a non-functional protein (Type II HAE).
The clinical phenotype across frameshift mutations is similar — the specific nucleotide
deleted matters less than the consequence: absent C1-INH.
Modern therapies have transformed HAE management. The HELP trial99 HELP trial
Riedl et al., Allergy,
2020 — lanadelumab subcutaneously every 2–4 weeks
showed 85.7–100% of patients achieved a ≥50% attack reduction compared to 26.8% on
placebo, with 37.9–48.1% becoming completely attack-free. The APeX-2 trial1010 APeX-2 trial
Zuraw et al.,
JACI, 2021 — berotralstat 150 mg daily showed
an oral agent reduced attacks from 2.35 to 1.31 per month (P<0.001). For acute attacks,
icatibant1111 icatibant
Cicardi et al., NEJM, 2010 — FAST-1/2 trials
(a bradykinin B2 receptor antagonist) reduced time to symptom relief to 2.0–2.5 hours
compared to 4.6–12.0 hours for control, making it a reliable on-demand treatment.
Practical Actions
For carriers of this mutation, the primary priority is an accurate diagnosis followed by access to on-demand acute treatment — carried at all times — and an individualized prophylaxis plan. Laryngeal attacks follow a predictable progression: a predyspnea phase averaging 3.7 hours, then a dyspnea phase averaging 41 minutes, then rapid deterioration. Treatment must begin in the predyspnea phase. First-degree relatives should be tested regardless of symptom history — asymptomatic carriers can develop their first severe attack at any age, and attacks are frequently triggered by surgery, dental procedures, stress, estrogen-containing contraceptives, or infection.
Estrogen-containing medications (oral contraceptives, hormone replacement therapy) can precipitate and worsen HAE attacks by reducing C1-INH levels further and increasing bradykinin production. Women with this mutation should specifically avoid estrogen-containing preparations and discuss progestogen-only or non-hormonal alternatives with their physician.
Interactions
HAE attacks can be triggered or worsened by ACE inhibitors — drugs used for blood pressure and heart failure — because ACE normally degrades bradykinin, and ACE inhibition allows bradykinin to accumulate. HAE patients receiving this mutation result should review all current medications with their treating allergist or immunologist, as several drug classes interact meaningfully with the bradykinin pathway.
Genotype Interpretations
What each possible genotype means for this variant:
No SERPING1 c.856del — normal C1-inhibitor function
You do not carry the SERPING1 c.856del frameshift deletion. Both copies of your SERPING1 gene are intact, and your C1-inhibitor production from this locus is unaffected. This is the genotype found in the vast majority of people — the deletion allele affects roughly 1 in 50,000 individuals globally. Note that many other SERPING1 mutations can cause hereditary angioedema; a negative result for this specific variant does not comprehensively screen for all HAE-causing mutations.
One copy of the SERPING1 frameshift — hereditary angioedema Type I
The frameshift at c.856 almost certainly triggers nonsense-mediated mRNA decay, eliminating protein production from the affected allele. Circulating C1-INH antigen typically falls to 5–30% of normal in Type I HAE (versus 70–135% in unaffected individuals), and functional C1-INH activity is similarly reduced. Without adequate C1-INH, factor XIIa activates plasma kallikrein, which cleaves high-molecular-weight kininogen to release bradykinin. Bradykinin binds B2 receptors on vascular endothelium, opening intercellular junctions and driving fluid into the interstitium — producing the characteristic non-pitting edema that does not respond to antihistamines or steroids.
Attacks affect the skin (face, hands, feet, genitalia), gastrointestinal tract (severe colicky abdominal pain with vomiting, often misdiagnosed as appendicitis), and the larynx (the most dangerous site — swelling can progress to complete airway obstruction within hours). Attack frequency ranges from monthly in severely affected individuals to a few times per year in mildly affected ones. Trigger factors include physical trauma, surgery, dental procedures, infection, emotional stress, and — importantly in women — estrogen-containing medications.
A systematic review across 10,310 HAE patients found mean diagnostic delay of 3.9–26 years. During the undiagnosed period, patients typically receive multiple inappropriate treatments. The HAE asphyxiation mortality risk is 8.6% overall, dropping precipitously once the diagnosis is established and on-demand treatment prescribed.
Current standard of care includes: - On-demand acute treatment (carried at all times): icatibant (Firazyr, bradykinin B2 antagonist), plasma-derived C1-INH concentrate (Berinert, Haegarda), or recombinant C1-INH (Ruconest) - Long-term prophylaxis (for frequent attackers): lanadelumab (Takhzyro, monoclonal anti-kallikrein) every 2–4 weeks subcutaneously, or berotralstat (Orladeyo, oral kallikrein inhibitor) 150 mg daily - Short-term prophylaxis (before surgical/dental procedures): C1-INH concentrate 1–2 hours before the procedure
Two copies of the SERPING1 frameshift — very high risk of severe HAE
Homozygosity for a SERPING1 frameshift is expected to eliminate virtually all C1-INH production, producing more severe biochemical deficiency than heterozygosity. C4 levels may be persistently low even between attacks (rather than intermittently low). Clinical experience with homozygous HAE-C1-INH is limited to case reports, and the most appropriate management mirrors that of severely affected heterozygous carriers with frequent laryngeal attacks.
Long-term prophylaxis is essentially mandatory given the expected attack burden. Lanadelumab (Takhzyro) and berotralstat (Orladeyo) should be discussed with an HAE specialist immediately. On-demand treatment must be available at all times.
Genetic counseling is especially important: a homozygous individual will transmit the deletion to 100% of biological children (making all offspring at minimum heterozygous for this variant). If the partner also carries the deletion, 25% of offspring would be homozygous. Preimplantation genetic testing should be discussed.