Research

rs11057830 — SCARB1

Intronic variant in SCARB1 that affects SR-BI receptor function and the intestinal and hepatic uptake of fat-soluble vitamin E (alpha-tocopherol) and carotenoids from HDL particles

Moderate Risk Factor Share

Details

Gene
SCARB1
Chromosome
12
Risk allele
G
Consequence
Intronic
Inheritance
Additive
Clinical
Risk Factor
Evidence
Moderate
Chip coverage
v3 v4 v5

Population Frequency

GG
73%
AG
25%
AA
2%

Ancestry Frequencies

african
17%
european
15%
latino
14%
south_asian
11%
east_asian
10%

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SCARB1 — Your Gateway for HDL-Carried Vitamin E and Carotenoids

Every fat-soluble micronutrient you absorb --- vitamin E, beta-carotene, lutein, zeaxanthin --- faces a double barrier: the intestinal wall and then the liver. At both sites, a single receptor protein called SR-BI11 SR-BI
Scavenger receptor class B type I, encoded by SCARB1 on chromosome 12q24; an integral membrane protein with a large hydrophobic tunnel that channels lipophilic molecules into cells
(scavenger receptor class B type I, encoded by SCARB1) acts as the primary gateway. SR-BI is expressed in enterocytes lining the small intestine and in hepatocytes, where it performs the selective uptake of HDL22 HDL
High-density lipoprotein particles that carry fat-soluble vitamins and cholesterol from peripheral tissues back to the liver
-associated lipids --- including cholesterol, tocopherols, and carotenoids. The rs11057830 variant lies within an intron of SCARB1. While it does not change the protein's amino acid sequence, it is a tag SNP for a haplotype that influences the receptor's functional expression or activity. People carrying more copies of the G allele show lower circulating alpha-tocopherol than those with the A allele, a relationship confirmed in multiple cohorts totaling over 7,000 individuals.

The Mechanism

SR-BI's lipid transport mechanism relies on a large hydrophobic tunnel that threads through the membrane. Lipid molecules associate with HDL particles docked at the receptor's extracellular domain, then pass through this tunnel into the cell. The selectivity of this tunnel33 selectivity of this tunnel
Li et al. 2023 showed that blocking the cholesterol tunnel with a C384Y mutation abolishes the preferential uptake of lutein and zeaxanthin, while beta-carotene uptake is less affected
explains why SCARB1 shows different uptake efficiencies for different carotenoids: the more hydrophilic xanthophylls (lutein, zeaxanthin) navigate the tunnel most efficiently, while the purely hydrophobic beta-carotene relies on it less. The key functional finding for vitamin E is dramatic: Reboul et al. 200644 Reboul et al. 2006
Reboul E et al. Scavenger receptor class B type I (SR-BI) is involved in vitamin E transport across the enterocyte. J Biol Chem, 2006
showed that blocking SR-BI with a specific inhibitor (BLT1) reduced alpha-tocopherol transport across cultured enterocytes by up to 80%. In mice overexpressing intestinal SR-BI, gamma-tocopherol bioavailability was 2.7-fold higher than in wild-type animals. This positions SR-BI as the dominant --- not merely contributing --- protein for vitamin E intestinal absorption. RS-BI also handles the final delivery step. In brain capillary endothelial cells, adenovirus-mediated SR-BI overexpression55 adenovirus-mediated SR-BI overexpression
Goti D et al. Scavenger receptor class B, type I is expressed in porcine brain capillary endothelial cells and contributes to selective uptake of HDL-associated vitamin E. J Neurochem, 2001
produced a 4-fold increase in HDL-associated alpha-tocopherol uptake, demonstrating that SR-BI shapes vitamin E delivery not just at the gut but at every tissue that relies on HDL-mediated supply. How rs11057830 specifically alters SR-BI function is not fully characterized --- it may tag a haplotype affecting promoter activity, splicing, or a nearby regulatory element. What is established is the functional consequence: fewer copies of the A allele correlates with lower circulating tocopherol.

The Evidence

The primary evidence comes from a genome-wide association study66 genome-wide association study
Major JM et al. Genome-wide association study identifies common variants associated with circulating vitamin E levels. Hum Mol Genet, 2011
conducted across 5,006 men of European descent in two cohorts, including the Alpha-Tocopherol, Beta-Carotene Cancer Prevention (ATBC) Study. After controlling for age, BMI, cholesterol, and supplementation status, rs11057830 was associated with circulating alpha-tocopherol at genome-wide significance (P = 2.0 × 10⁻⁸). The A allele conferred higher levels (beta = +0.04 on a log scale per allele), with mean alpha-tocopherol increasing from 11.8 mg/L (GG) to 12.2 mg/L (GA) to 12.7 mg/L (AA). The finding was replicated in 992 men from the PLCO trial and 2,775 women from the Nurses' Health Study, with the combined meta-analysis reaching P = 8.2 × 10⁻⁹. Together with CYP4F2 rs2108622 and the APOA5 locus rs964184, rs11057830 explained 1.7% of the variance in circulating alpha-tocopherol. For carotenoids, related SCARB1 variants in strong linkage disequilibrium with rs11057830 (particularly rs11057841, r² ≈ 0.7) have been associated with serum lutein levels. A study of 302 healthy subjects77 study of 302 healthy subjects
McKay GJ et al. Investigation of genetic variation in scavenger receptor class B, member 1 (SCARB1) and association with serum carotenoids. Ophthalmology, 2013
found that rs11057841 predicted a 24% increase in serum lutein per T allele (P < 0.01 after permutation correction), with independent replication in the TwinsUK and CAREDS cohorts. Given the strong LD between rs11057841 and rs11057830, this carotenoid association likely applies to the same functional haplotype.

Practical Implications

The 7--8% difference in circulating alpha-tocopherol between GG and AA genotypes is modest in absolute terms. However, for GG carriers --- roughly 73% of people --- it represents the lower end of normal SR-BI-mediated uptake. Because SR-BI accounts for up to 80% of intestinal vitamin E transport, optimizing dietary delivery is directly relevant. Two factors amplify practical impact. First, vitamin E absorption is highly fat-dependent --- consuming it with a meal containing dietary fat improves micellarization and SR-BI access. Second, the natural RRR-alpha-tocopherol form is more efficiently retained by the liver (through the alpha-tocopherol transfer protein, alpha-TTP) than synthetic dl-alpha-tocopherol; for people with already-reduced SR-BI uptake, maximizing what reaches the liver is important. The carotenoid connection is worth noting. Beta-carotene, lutein, and zeaxanthin all use SR-BI for intestinal absorption. GG carriers absorbing less through this pathway may benefit from optimizing carotenoid bioavailability --- eating cooked rather than raw vegetables, pairing with fat, and favoring foods with high carotenoid density.

Interactions

This variant acts at the absorption step of the vitamin E pathway. A functionally distinct step is handled by rs6994076 in TTPA, which governs how much alpha-tocopherol the liver redistributes to tissues via VLDL particles. Individuals who carry both rs11057830 GG (reduced SR-BI absorption) and rs6994076 TT (reduced alpha-TTP expression) face compounded limitations: less vitamin E absorbed through the intestine AND less efficiently retained and distributed by the liver. This combination represents the most actionable double-hit in the vitamin E pathway, warranting both dietary and supplementation attention. The compound effect of GG at rs11057830 + TT at rs6994076 should be modeled as a compound action recommending higher-dose natural tocopherol supplementation with fat-rich meals. For carotenoids, rs12934922 in BCO1 (beta-carotene 15,15'-oxygenase) interacts with SCARB1 at a downstream step: rs11057830 determines how much beta-carotene enters the body; BCO1 rs12934922 determines how efficiently it is converted to retinol. Poor converters (BCO1 TT) who also carry SCARB1 GG absorb less beta-carotene AND convert less of it to vitamin A.

Nutrient Interactions

vitamin E (alpha-tocopherol) reduced_absorption
beta-carotene reduced_absorption
lutein reduced_absorption

Genotype Interpretations

What each possible genotype means for this variant:

AG “Intermediate SR-BI Function” Intermediate Caution

Intermediate SR-BI function --- moderately improved vitamin E absorption

The heterozygous state produces a mix of the reduced-function and higher-function SR-BI protein or expression pattern. Your intestinal absorption of alpha-tocopherol, beta-carotene, lutein, and zeaxanthin via SR-BI is modestly better than GG homozygotes. The difference is not large enough to require supplementation changes, but dietary strategies that maximize SR-BI efficiency remain relevant. The additive inheritance pattern means that each copy of the A allele provides approximately half the benefit of two copies. GA carriers sit comfortably within normal dietary range for most individuals, but those with increased oxidative stress demands (smokers, athletes, high pollution environments) may benefit from the same dietary optimization as GG carriers.

GG “Reduced SR-BI Function” Reduced Caution

Lower SR-BI-mediated vitamin E and carotenoid absorption

SR-BI (encoded by SCARB1) is the dominant protein for absorbing alpha-tocopherol, gamma-tocopherol, beta-carotene, lutein, and zeaxanthin from the intestinal lumen into enterocytes, and for facilitating their selective uptake from HDL particles in the liver and other tissues. Inhibition studies blocking SR-BI reduce intestinal vitamin E transport by up to 80%. The rs11057830 G allele tags a haplotype with reduced SCARB1 function. While the molecular mechanism (regulatory vs. splicing effect) has not been precisely characterized, the functional consequence is consistent across multiple large cohorts: GG carriers have lower circulating alpha-tocopherol. Similarly, related SCARB1 variants in strong linkage disequilibrium with rs11057830 predict lower serum lutein levels in independent studies. Because most people carry this genotype, it defines the baseline population-level vitamin E absorption through SR-BI. GG carriers can still absorb adequate vitamin E through diet, but they do so less efficiently and benefit from dietary strategies that maximize bioavailability through this pathway.

AA “Enhanced SR-BI Function” High Absorption

Higher SR-BI function --- enhanced vitamin E and carotenoid absorption

The AA genotype represents the highest-function end of the rs11057830 spectrum for SR-BI-mediated fat-soluble micronutrient absorption. Each A allele independently increases alpha-tocopherol levels, and two copies produce the largest observed difference (~7% higher than GG). For carotenoids, related SCARB1 A-allele haplotypes are associated with 24% higher serum lutein per allele in candidate gene studies, suggesting that AA carriers may also absorb lutein and zeaxanthin from food more efficiently. This does not mean AA carriers absorb unlimited carotenoids --- intestinal SR-BI saturation and the limited efficiency of passive diffusion still apply --- but it does mean that dietary vitamin E and carotenoids translate more efficiently into circulating levels. No special actions are needed; standard dietary intake is likely well-utilized. This is a favorable finding in the vitamin E absorption pathway.

Key References

PMID: 21729881

Major et al. 2011, Hum Mol Genet — GWAS of 5,006 men of European descent across two cohorts identifies rs11057830 in SCARB1 at genome-wide significance for circulating alpha-tocopherol (P=2.0×10⁻⁸); A allele associated with higher levels

PMID: 16380385

Reboul et al. 2006 — first demonstration that SR-BI mediates up to 80% of intestinal vitamin E (alpha- and gamma-tocopherol) transport across enterocytes in Caco-2 cells and mouse models

PMID: 23562302

McKay et al. 2013 — investigation of SCARB1 variants and serum carotenoid levels; rs11057841 (high LD with rs11057830) associated with 24% higher serum lutein per T allele in 302 subjects, replicated in TwinsUK and CAREDS cohorts

PMID: 36863431

Li et al. 2023 — mechanistic study of SR-BI's hydrophobic tunnel as the structural basis for selective macular carotenoid (lutein, zeaxanthin) uptake; tunnel blockade abolishes xanthophyll preference

PMID: 11208913

Goti et al. 2001 — SR-BI mediates 2- to 4-fold increase in selective HDL-associated alpha-tocopherol uptake in porcine brain endothelial cells, demonstrating trans-tissue vitamin E delivery