rs11057830 — SCARB1
Intronic variant in SCARB1 that affects SR-BI receptor function and the intestinal and hepatic uptake of fat-soluble vitamin E (alpha-tocopherol) and carotenoids from HDL particles
Details
- Gene
- SCARB1
- Chromosome
- 12
- Risk allele
- G
- Consequence
- Intronic
- Inheritance
- Additive
- Clinical
- Risk Factor
- Evidence
- Moderate
- Chip coverage
- v3 v4 v5
Population Frequency
Ancestry Frequencies
Related SNPs
Category
Nutrition & MetabolismSee your personal result for SCARB1
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SCARB1 — Your Gateway for HDL-Carried Vitamin E and Carotenoids
Every fat-soluble micronutrient you absorb --- vitamin E, beta-carotene, lutein,
zeaxanthin --- faces a double barrier: the intestinal wall and then the liver. At
both sites, a single receptor protein called
SR-BI11 SR-BI
Scavenger receptor class B type I, encoded by SCARB1 on chromosome 12q24;
an integral membrane protein with a large hydrophobic tunnel that channels lipophilic
molecules into cells (scavenger receptor class B type I, encoded by SCARB1)
acts as the primary gateway. SR-BI is expressed in enterocytes lining the small
intestine and in hepatocytes, where it performs the selective uptake of
HDL22 HDL
High-density lipoprotein particles that carry fat-soluble vitamins and
cholesterol from peripheral tissues back to the liver-associated lipids ---
including cholesterol, tocopherols, and carotenoids.
The rs11057830 variant lies within an intron of SCARB1. While it does not change
the protein's amino acid sequence, it is a tag SNP for a haplotype that influences
the receptor's functional expression or activity. People carrying more copies of
the G allele show lower circulating alpha-tocopherol than those with the A allele,
a relationship confirmed in multiple cohorts totaling over 7,000 individuals.
The Mechanism
SR-BI's lipid transport mechanism relies on a large hydrophobic tunnel that
threads through the membrane. Lipid molecules associate with HDL particles docked
at the receptor's extracellular domain, then pass through this tunnel into the
cell. The
selectivity of this tunnel33 selectivity of this tunnel
Li et al. 2023 showed that blocking the cholesterol
tunnel with a C384Y mutation abolishes the preferential uptake of lutein and
zeaxanthin, while beta-carotene uptake is less affected
explains why SCARB1 shows different uptake efficiencies for different carotenoids:
the more hydrophilic xanthophylls (lutein, zeaxanthin) navigate the tunnel most
efficiently, while the purely hydrophobic beta-carotene relies on it less.
The key functional finding for vitamin E is dramatic:
Reboul et al. 200644 Reboul et al. 2006
Reboul E et al. Scavenger receptor class B type I (SR-BI) is involved
in vitamin E transport across the enterocyte. J Biol Chem, 2006
showed that blocking SR-BI with a specific inhibitor (BLT1) reduced alpha-tocopherol
transport across cultured enterocytes by up to 80%. In mice overexpressing intestinal
SR-BI, gamma-tocopherol bioavailability was 2.7-fold higher than in wild-type animals.
This positions SR-BI as the dominant --- not merely contributing --- protein for
vitamin E intestinal absorption.
RS-BI also handles the final delivery step. In brain capillary endothelial cells,
adenovirus-mediated SR-BI overexpression55 adenovirus-mediated SR-BI overexpression
Goti D et al. Scavenger receptor class B, type I
is expressed in porcine brain capillary endothelial cells and contributes to selective
uptake of HDL-associated vitamin E. J Neurochem, 2001
produced a 4-fold increase in HDL-associated alpha-tocopherol uptake, demonstrating that
SR-BI shapes vitamin E delivery not just at the gut but at every tissue that relies
on HDL-mediated supply.
How rs11057830 specifically alters SR-BI function is not fully characterized --- it
may tag a haplotype affecting promoter activity, splicing, or a nearby regulatory
element. What is established is the functional consequence: fewer copies of the
A allele correlates with lower circulating tocopherol.
The Evidence
The primary evidence comes from a
genome-wide association study66 genome-wide association study
Major JM et al. Genome-wide association study identifies
common variants associated with circulating vitamin E levels. Hum Mol Genet, 2011
conducted across 5,006 men of European descent in two cohorts, including the Alpha-Tocopherol,
Beta-Carotene Cancer Prevention (ATBC) Study. After controlling for age, BMI, cholesterol, and supplementation
status, rs11057830 was associated with circulating alpha-tocopherol at genome-wide
significance (P = 2.0 × 10⁻⁸). The A allele conferred higher levels (beta = +0.04 on
a log scale per allele), with mean alpha-tocopherol increasing from 11.8 mg/L (GG) to
12.2 mg/L (GA) to 12.7 mg/L (AA). The finding was replicated in 992 men from the PLCO
trial and 2,775 women from the Nurses' Health Study, with the combined meta-analysis
reaching P = 8.2 × 10⁻⁹. Together with CYP4F2 rs2108622 and the APOA5 locus rs964184,
rs11057830 explained 1.7% of the variance in circulating alpha-tocopherol.
For carotenoids, related SCARB1 variants in strong linkage disequilibrium with
rs11057830 (particularly rs11057841, r² ≈ 0.7) have been associated with serum lutein
levels. A
study of 302 healthy subjects77 study of 302 healthy subjects
McKay GJ et al. Investigation of genetic variation in
scavenger receptor class B, member 1 (SCARB1) and association with serum carotenoids.
Ophthalmology, 2013
found that rs11057841 predicted a 24% increase in serum lutein per T allele
(P < 0.01 after permutation correction), with independent replication in the TwinsUK
and CAREDS cohorts. Given the strong LD between rs11057841 and rs11057830, this
carotenoid association likely applies to the same functional haplotype.
Practical Implications
The 7--8% difference in circulating alpha-tocopherol between GG and AA genotypes is modest in absolute terms. However, for GG carriers --- roughly 73% of people --- it represents the lower end of normal SR-BI-mediated uptake. Because SR-BI accounts for up to 80% of intestinal vitamin E transport, optimizing dietary delivery is directly relevant. Two factors amplify practical impact. First, vitamin E absorption is highly fat-dependent --- consuming it with a meal containing dietary fat improves micellarization and SR-BI access. Second, the natural RRR-alpha-tocopherol form is more efficiently retained by the liver (through the alpha-tocopherol transfer protein, alpha-TTP) than synthetic dl-alpha-tocopherol; for people with already-reduced SR-BI uptake, maximizing what reaches the liver is important. The carotenoid connection is worth noting. Beta-carotene, lutein, and zeaxanthin all use SR-BI for intestinal absorption. GG carriers absorbing less through this pathway may benefit from optimizing carotenoid bioavailability --- eating cooked rather than raw vegetables, pairing with fat, and favoring foods with high carotenoid density.
Interactions
This variant acts at the absorption step of the vitamin E pathway. A functionally distinct step is handled by rs6994076 in TTPA, which governs how much alpha-tocopherol the liver redistributes to tissues via VLDL particles. Individuals who carry both rs11057830 GG (reduced SR-BI absorption) and rs6994076 TT (reduced alpha-TTP expression) face compounded limitations: less vitamin E absorbed through the intestine AND less efficiently retained and distributed by the liver. This combination represents the most actionable double-hit in the vitamin E pathway, warranting both dietary and supplementation attention. The compound effect of GG at rs11057830 + TT at rs6994076 should be modeled as a compound action recommending higher-dose natural tocopherol supplementation with fat-rich meals. For carotenoids, rs12934922 in BCO1 (beta-carotene 15,15'-oxygenase) interacts with SCARB1 at a downstream step: rs11057830 determines how much beta-carotene enters the body; BCO1 rs12934922 determines how efficiently it is converted to retinol. Poor converters (BCO1 TT) who also carry SCARB1 GG absorb less beta-carotene AND convert less of it to vitamin A.
Nutrient Interactions
Genotype Interpretations
What each possible genotype means for this variant:
Intermediate SR-BI function --- moderately improved vitamin E absorption
The heterozygous state produces a mix of the reduced-function and higher-function SR-BI protein or expression pattern. Your intestinal absorption of alpha-tocopherol, beta-carotene, lutein, and zeaxanthin via SR-BI is modestly better than GG homozygotes. The difference is not large enough to require supplementation changes, but dietary strategies that maximize SR-BI efficiency remain relevant. The additive inheritance pattern means that each copy of the A allele provides approximately half the benefit of two copies. GA carriers sit comfortably within normal dietary range for most individuals, but those with increased oxidative stress demands (smokers, athletes, high pollution environments) may benefit from the same dietary optimization as GG carriers.
Lower SR-BI-mediated vitamin E and carotenoid absorption
SR-BI (encoded by SCARB1) is the dominant protein for absorbing alpha-tocopherol, gamma-tocopherol, beta-carotene, lutein, and zeaxanthin from the intestinal lumen into enterocytes, and for facilitating their selective uptake from HDL particles in the liver and other tissues. Inhibition studies blocking SR-BI reduce intestinal vitamin E transport by up to 80%. The rs11057830 G allele tags a haplotype with reduced SCARB1 function. While the molecular mechanism (regulatory vs. splicing effect) has not been precisely characterized, the functional consequence is consistent across multiple large cohorts: GG carriers have lower circulating alpha-tocopherol. Similarly, related SCARB1 variants in strong linkage disequilibrium with rs11057830 predict lower serum lutein levels in independent studies. Because most people carry this genotype, it defines the baseline population-level vitamin E absorption through SR-BI. GG carriers can still absorb adequate vitamin E through diet, but they do so less efficiently and benefit from dietary strategies that maximize bioavailability through this pathway.
Higher SR-BI function --- enhanced vitamin E and carotenoid absorption
The AA genotype represents the highest-function end of the rs11057830 spectrum for SR-BI-mediated fat-soluble micronutrient absorption. Each A allele independently increases alpha-tocopherol levels, and two copies produce the largest observed difference (~7% higher than GG). For carotenoids, related SCARB1 A-allele haplotypes are associated with 24% higher serum lutein per allele in candidate gene studies, suggesting that AA carriers may also absorb lutein and zeaxanthin from food more efficiently. This does not mean AA carriers absorb unlimited carotenoids --- intestinal SR-BI saturation and the limited efficiency of passive diffusion still apply --- but it does mean that dietary vitamin E and carotenoids translate more efficiently into circulating levels. No special actions are needed; standard dietary intake is likely well-utilized. This is a favorable finding in the vitamin E absorption pathway.
Key References
Major et al. 2011, Hum Mol Genet — GWAS of 5,006 men of European descent across two cohorts identifies rs11057830 in SCARB1 at genome-wide significance for circulating alpha-tocopherol (P=2.0×10⁻⁸); A allele associated with higher levels
Reboul et al. 2006 — first demonstration that SR-BI mediates up to 80% of intestinal vitamin E (alpha- and gamma-tocopherol) transport across enterocytes in Caco-2 cells and mouse models
McKay et al. 2013 — investigation of SCARB1 variants and serum carotenoid levels; rs11057841 (high LD with rs11057830) associated with 24% higher serum lutein per T allele in 302 subjects, replicated in TwinsUK and CAREDS cohorts
Li et al. 2023 — mechanistic study of SR-BI's hydrophobic tunnel as the structural basis for selective macular carotenoid (lutein, zeaxanthin) uptake; tunnel blockade abolishes xanthophyll preference
Goti et al. 2001 — SR-BI mediates 2- to 4-fold increase in selective HDL-associated alpha-tocopherol uptake in porcine brain endothelial cells, demonstrating trans-tissue vitamin E delivery