Tag

HLA

23 genetic variants with this tag.

RSID	Gene	Description	Category
rs12191877	HLA-C Tag for *06:02	Tag SNP for HLA-C*06:02, the strongest genetic risk factor for psoriasis, det...	Psoriasis & Spondyloarthropathy	HLA	Established
rs1154155	TRA	T-cell receptor alpha locus variant associated with narcolepsy susceptibility...	Hormones & Sleep	HLA	Strong
rs17482078	ERAP1 R725Q	Missense variant (Arg725Gln) in the ERAP1 peptide-binding domain that reduces...	Psoriasis & Spondyloarthropathy	HLA	Strong
rs2187668	HLA-DQA1 DQ2.5 tag	Tag SNP for HLA-DQ2.5 haplotype, the strongest genetic risk factor for celiac...	Interferon Signaling & Systemic Autoimmune	HLA	Established
rs3077	HLA-DPA1 HLA-DPA1 3′ UTR variant	Regulatory variant in the 3′ UTR of HLA-DPA1 that controls surface expression...	Interferon Signaling & Systemic Autoimmune	HLA	Strong
rs419788	SKIV2L	Intronic SKIV2L variant in the MHC class III region; the T allele tags an ind...	Interferon Signaling & Systemic Autoimmune	HLA	Moderate
rs3129878	HLA-DRA HLA-DRA Variant	Intronic variant in the HLA class II region associated with nonobstructive az...	Endometriosis & Uterine Health	HLA	Strong
rs660895	HLA-DRB1	Regulatory tag SNP in the HLA-DRB1 region; the G allele marks the HLA-DRB1*04...	Interferon Signaling & Systemic Autoimmune	HLA	Strong
rs6910071	TSBP1	MHC-region intronic variant tagging HLA-DRB1 shared epitope haplotypes; G all...	Interferon Signaling & Systemic Autoimmune	HLA	Strong
rs4349859	HLA-B HLA-B27 proxy	Intronic tag SNP located 41 kb centromeric of HLA-B and 5.4 kb telomeric of M...	Psoriasis & Spondyloarthropathy	HLA	Established
rs4406273	HLA-C	Near-HLA-C intergenic variant that tags HLA-C*06:02 haplotype, conferring ris...	Psoriasis & Spondyloarthropathy	HLA	Strong
rs498422	LOC101929163 LOC101929163 Variant	Intronic variant in TSBP1-AS1 (LOC101929163), a non-coding antisense RNA in t...	Endometriosis & Uterine Health	HLA	Emerging
rs7770370	HLA-DPB1	Intronic tag SNP in HLA-DPB1 (and upstream of HLA-DPA1) that marks the HLA-DP...	Interferon Signaling & Systemic Autoimmune	HLA	Strong
rs9268839	HLA-DRA	Intergenic tag SNP upstream of HLA-DRA; the G allele is the primary GWAS sign...	Interferon Signaling & Systemic Autoimmune	HLA	Strong
rs9277535	HLA-DPB1	3' UTR eQTL that reduces HLA-DPB1 expression, impairing antigen presentation ...	Interferon Signaling & Systemic Autoimmune	HLA	Strong
rs17612852	HLA-DQA1 HLA-DQA1 Peanut Allergy Tag SNP	Intronic tag SNP in HLA-DQA1 in strong LD with HLA-DQA1*01:02; the G allele i...	Allergy & Atopic Disease	HLA	Strong
rs2040410	HLA-DQA1 HLA-DQ Autoimmune Tag SNP	Intronic tag SNP near HLA-DQA1 that marks the DR3 (DRB10301-DQA10501-DQB1*0...	Allergy & Atopic Disease	HLA	Strong
rs3129934	HLA-DRB5 DR15 haplotype tag	Tag SNP for HLA-DRB5*01:01 on the DR15 susceptibility haplotype, physically n...	Neurology & Cognition	HLA	Strong
rs3135388	HLA-DRA Tag for DRB1*15:01	Tag SNP for HLA-DRB1*15:01 (physically located near HLA-DRA), the strongest g...	Neurology & Cognition	HLA	Established
rs7192	HLA-DRA HLA-DRA Leu242Val	Missense variant (Leu242Val) in the HLA-DRA alpha chain; the T allele tags HL...	Allergy & Atopic Disease	HLA	Strong
rs9275596	HLA-DQ HLA-DQ Region Peanut Allergy Locus	Intergenic tag SNP between HLA-DQB1 and HLA-DQA2 tagging the HLA-DQA1*01:02 r...	Allergy & Atopic Disease	HLA	Strong
rs9271366	HLA-DQA1 eQTL	Intergenic eQTL near HLA-DQA1 that tags the DR15 haplotype (DRB115:01/DQA10...	Neurology & Cognition	HLA	Established
rs9275328	HLA-DQB1 DQB1 region	Intergenic SNP between HLA-DQB1 and HLA-DQA2 that tags the DQB1*06:02 allele,...	Neurology & Cognition	HLA	Strong