Research

rs1050450 — GPX1 Pro198Leu

Selenium-dependent antioxidant enzyme that neutralizes hydrogen peroxide; the Leu variant reduces enzyme activity and responsiveness to selenium

Strong Risk Factor

Details

Gene
GPX1
Chromosome
3
Risk allele
A
Protein change
p.Pro200Leu
Consequence
Missense
Inheritance
Codominant
Clinical
Risk Factor
Evidence
Strong
Chip coverage
v3 v4 v5

Population Frequency

GG
49%
AG
42%
AA
9%

Ancestry Frequencies

european
31%
african
29%
latino
28%
south_asian
24%
east_asian
6%

Related SNPs

GPX1 Pro198Leu — Your Selenium-Powered Antioxidant Shield

Glutathione peroxidase 1 (GPX1) is the most abundant member of the selenoprotein family11 selenoprotein family
Proteins that incorporate the amino acid selenocysteine at their active site, requiring dietary selenium for synthesis
, a group of enzymes that depend on dietary selenium for their activity. GPX1 serves as a frontline defense against oxidative damage by converting hydrogen peroxide (H2O2) and organic hydroperoxides into harmless water and alcohols, using glutathione22 glutathione
A tripeptide (glutamate-cysteine-glycine) that serves as the cell's primary antioxidant and detoxification molecule
as its reducing substrate. The Pro198Leu variant (rs1050450) changes a proline to leucine in the enzyme, reducing its catalytic activity and -- critically -- diminishing its responsiveness to selenium. This makes it one of the most actionable variants in the antioxidant pathway: adequate selenium intake can partially compensate for the genetic reduction.

The Mechanism

GPX1 contains a selenocysteine residue33 selenocysteine residue
The 21st amino acid, encoded by a UGA codon that is recoded by a selenocysteine insertion sequence (SECIS) in the mRNA's 3' UTR
at its active site, which is essential for catalysis. The enzyme reduces H2O2 to water in a two-step reaction: selenocysteine is first oxidized by the peroxide substrate, then reduced back to its active form by two molecules of glutathione. This cycle occurs millions of times per second in every cell.

The Pro198Leu substitution (C>T at codon 198, reported as G>A on the plus strand) does not directly disrupt the active site but alters the enzyme's tertiary structure in a way that reduces catalytic efficiency. In vitro studies44 In vitro studies
Hu YJ and Diamond AM demonstrated in breast carcinoma cell lines that the Leu variant shows significantly lower enzyme activity and reduced responsiveness to selenium supplementation
in cell lines showed the Leu allele produces an enzyme with approximately 40% lower activity than the Pro allele. Perhaps more importantly, the Leu variant shows a blunted response to selenium supplementation -- the enzyme fails to upregulate as effectively when selenium levels rise.

A study of 405 healthy individuals55 study of 405 healthy individuals
Jablonska E et al. Association between GPx1 Pro198Leu polymorphism, GPx1 activity and plasma selenium concentration in humans. Eur J Nutr, 2009
quantified this genotype-selenium interaction precisely. The correlation between plasma selenium and red blood cell GPx1 activity was strong for Pro/Pro carriers (r = 0.44, p < 0.001), intermediate for Pro/Leu (r = 0.35, p < 0.001), and essentially absent for Leu/Leu (r = 0.25, p = 0.45). In other words, Leu/Leu carriers derive substantially less antioxidant benefit from a given selenium intake compared to Pro/Pro carriers.

The Evidence

The clinical consequences of reduced GPX1 activity have been examined across multiple disease domains.

Cancer risk. A comprehensive meta-analysis of 60 studies66 comprehensive meta-analysis of 60 studies
Xie Y et al. Association between GPX1 rs1050450 polymorphisms and cancer risk. Int J Clin Exp Pathol, 2020
(21,296 cancer cases, 30,346 controls) found the TT (Leu/Leu) genotype associated with modestly increased overall cancer susceptibility (OR 1.15, 95% CI 1.00-1.31). Subgroup analyses revealed particularly strong associations with bladder cancer (OR 3.56, 95% CI 1.42-8.94), head and neck cancer (OR 2.19, 95% CI 1.39-3.46), and brain tumors (OR 1.19, 95% CI 1.03-1.37).

Cardiovascular disease. A meta-analysis of 10 studies77 meta-analysis of 10 studies
Bao Y et al. Association of GPx-1 rs1050450 Pro198Leu and Pro197Leu polymorphisms with cardiovascular risk. J Geriatr Cardiol, 2014
(1,430 cases, 3,767 controls) found the variant associated with cardiovascular disease risk under a co-dominant model (OR 1.36, 95% CI 1.08-1.70), with a particularly strong effect in East Asian populations (OR 1.84, 95% CI 1.39-2.43). A Japanese study of type 2 diabetic patients found the Leu allele associated with increased carotid intima-media thickness88 increased carotid intima-media thickness
Hamanishi T et al. Functional variants in GPx-1 gene associated with increased intima-media thickness and macrovascular disease in Japanese type 2 diabetic patients. Diabetes, 2004
, a marker of subclinical atherosclerosis.

Diabetic neuropathy. The TT genotype was significantly associated with diabetic peripheral neuropathy99 diabetic peripheral neuropathy
Tang TS et al. Pro198Leu polymorphism in GPX1 contributes to diabetic peripheral neuropathy in type 2 diabetes patients. NeuroMolecular Medicine, 2016
in type 2 diabetes patients (OR 1.89, 95% CI 1.30-2.74), likely through increased oxidative damage to peripheral nerves.

Practical Implications

GPX1 Pro198Leu is unusually actionable because the enzyme's activity is directly dependent on selenium availability. The recommended dietary allowance (RDA)1010 recommended dietary allowance (RDA)
55 mcg/day for adults, set by the US Institute of Medicine based on the amount needed to maximize plasma GPx activity
for selenium is 55 mcg per day, but this was calibrated for an average population. Individuals with the Leu allele likely need higher selenium intake to achieve the same level of GPX1 activity. Good dietary sources include Brazil nuts (one nut contains roughly 70-90 mcg selenium), seafood, organ meats, and whole grains.

Selenium supplementation in the range of 100-200 mcg/day (total from diet plus supplements) appears safe and may partially compensate for the genetic reduction in enzyme activity. The tolerable upper limit is 400 mcg/day; exceeding this risks selenosis (hair loss, nail changes, neurological symptoms). Selenomethionine is the preferred supplemental form due to superior bioavailability.

Beyond selenium, maintaining adequate glutathione levels supports GPX1 function. N-acetylcysteine (NAC), a glutathione precursor, and dietary sources rich in cysteine (cruciferous vegetables, allium family) help sustain the glutathione pool that GPX1 requires as its co-substrate.

Interactions

GPX1 functions in a critical two-step antioxidant relay with SOD21111 SOD2
Superoxide dismutase 2 (rs4880), the mitochondrial enzyme that converts superoxide radicals to hydrogen peroxide
(manganese superoxide dismutase, rs4880). SOD2 converts superoxide radicals into hydrogen peroxide, which GPX1 then neutralizes to water. When GPX1 activity is reduced by the Pro198Leu variant, hydrogen peroxide generated by SOD2 accumulates, increasing oxidative damage. This effect is compounded when SOD2 itself carries the Val16Ala variant (rs4880 T allele), which alters its mitochondrial import efficiency. Studies have shown that the combination of variant alleles in both SOD2 and GPX1 is associated with significantly higher oxidative stress markers and increased bladder cancer risk compared to either variant alone. This SOD2-GPX1 interaction represents a biologically plausible compound effect: SOD2 feeds H2O2 into GPX1, so deficiency at either step -- or both -- disrupts the entire antioxidant relay. A compound implication should be created for the combination of GPX1 rs1050450 AA (or AG) with SOD2 rs4880 TT, recommending enhanced antioxidant support including selenium, CoQ10, and mitochondria-targeted antioxidants like MitoQ.

Nutrient Interactions

selenium increased_need

Genotype Interpretations

What each possible genotype means for this variant:

GG “Full Activity” Normal

Normal GPX1 enzyme activity with full selenium responsiveness

You carry two copies of the Pro (proline) allele, which produces GPX1 enzyme with full catalytic activity. Your enzyme responds normally to dietary selenium, meaning standard selenium intake is sufficient to maintain optimal antioxidant defense. About 49% of people globally share this genotype, though it is more common in East Asian populations (approximately 88%) and less common among those of European descent (approximately 48%).

AG “Reduced Activity” Intermediate Caution

Moderately reduced GPX1 activity with blunted selenium response

The heterozygous state produces roughly equal amounts of Pro and Leu GPX1 protein. Studies show the correlation between plasma selenium and erythrocyte GPx1 activity is intermediate (r = 0.35) compared to GG carriers (r = 0.44). While this is still a significant correlation, it means you need somewhat more selenium to achieve the same enzyme output. The clinical associations are generally weaker than for the AA genotype, but a modest increase in oxidative stress susceptibility has been documented.

AA “Low Activity” Reduced Warning

Significantly reduced GPX1 activity (~40% lower) with poor selenium responsiveness

The Leu/Leu genotype produces enzyme with both reduced baseline activity and impaired selenium responsiveness. A study of 405 individuals found no statistically significant correlation between plasma selenium and GPx1 activity in Leu/Leu carriers (r = 0.25, p = 0.45), compared to a robust correlation in Pro/Pro carriers (r = 0.44, p < 0.001). This means standard dietary selenium may be insufficient to optimize your antioxidant defense.

Meta-analyses associate this genotype with modestly increased risks of certain cancers (overall OR 1.15; bladder cancer OR 3.56), cardiovascular disease (OR 1.36), and diabetic neuropathy (OR 1.89). These are population-level risk increases, not certainties, and proactive antioxidant strategies can help mitigate the effect.

Key References

PMID: 31966829

Xie et al. 2020 — meta-analysis of 60 case-control studies (21,296 cases, 30,346 controls) finding TT vs CC OR 1.15 (1.00-1.31) for overall cancer risk; strongest for bladder cancer (OR 3.56) and head/neck cancer (OR 2.19)

PMID: 25009565

Bao et al. 2014 — meta-analysis of 10 studies (1,430 cases, 3,767 controls) finding Pro198Leu associated with cardiovascular disease risk (OR 1.36, 1.08-1.70), especially in East Asian populations (OR 1.84)

PMID: 19415410

Jablonska et al. 2009 — study of 405 healthy individuals showing genotype-dependent GPx1 response to selenium: Pro/Pro r=0.44, Pro/Leu r=0.35, Leu/Leu r=0.25 (not significant), demonstrating reduced selenium responsiveness

PMID: 21208780

Cominetti et al. 2011 — Brazil nut supplementation trial in 37 women showing genotype-dependent selenium and GPx activity response to dietary selenium

PMID: 27592002

Tang et al. 2016 — study finding TT genotype significantly associated with diabetic peripheral neuropathy risk in type 2 diabetes (OR 1.89, 1.30-2.74)

PMID: 35691509

Lubos et al. 2022 — comprehensive review of GPx1 in health and disease covering cardiovascular, metabolic, neurological, and cancer associations

PMID: 15331559

Hamanishi et al. 2004 — functional variants in GPX1 associated with increased carotid intima-media thickness and macrovascular disease risk in Japanese type 2 diabetic patients