Research

rs2736100 — TERT

Common intron 2 variant in the telomerase gene that influences telomere length, with the C allele associated with longer telomeres and increased cancer risk, while the A allele links to shorter telomeres and higher risk of degenerative diseases

Strong Risk Factor

Details

Gene
TERT
Chromosome
5
Risk allele
C
Consequence
Regulatory
Inheritance
Codominant
Clinical
Risk Factor
Evidence
Strong
Chip coverage
v3 v4 v5

Population Frequency

AA
25%
AC
50%
CC
25%

Ancestry Frequencies

european
51%
south_asian
50%
latino
50%
african
49%
east_asian
48%

Category

Immune & Gut

The Telomere-Telomerase Paradox — A Genetic Balancing Act Between Cancer and Aging

TERT (telomerase reverse transcriptase) is the catalytic subunit of telomerase, the enzyme that maintains telomere length by adding DNA repeats to chromosome ends. Telomeres shorten with each cell division11 Telomeres shorten with each cell division
protective caps on chromosomes that prevent genomic instability
, and when they reach a critical length, cells enter senescence or die. The rs2736100 variant sits in intron 2 of TERT at the 5p15.33 locus, a regulatory region that influences telomerase expression and activity. This common polymorphism reveals a fundamental paradox in human biology: the C allele promotes longer telomeres and increased cancer risk, while the A allele is associated with shorter telomeres and elevated risk of degenerative diseases.

The Mechanism

Rs2736100 is located within a putative regulatory region22 putative regulatory region
based on evolutionary sequence patterns and ESPERR scores
in the second intron of TERT. Though the variant itself doesn't change the protein sequence (it's intronic, not in a coding region), it appears to influence TERT gene expression levels. Studies have shown that the C allele is associated with increased TERT mRNA expression33 increased TERT mRNA expression
demonstrated in both normal and tumor lung tissues
in lung epithelial cells. The variant may affect enhancer activity through allele-specific binding44 enhancer activity through allele-specific binding
the DNA sequence shows differential affinity to nuclear proteins
to transcription factors, modulating how much telomerase the cell produces. Higher telomerase activity maintains longer telomeres, which can be protective against age-related cellular dysfunction but also allows cancer cells more replicative potential.

The Evidence

The dual nature of rs2736100 is best illustrated by a comprehensive meta-analysis of 57 studies55 comprehensive meta-analysis of 57 studies
encompassing cancer and non-cancer diseases
published in 2018. Researchers found that the C allele was associated with increased cancer risk (pooled OR 1.16, 95% CI 1.09–1.23), while the same allele protected against non-cancerous degenerative diseases (pooled OR 0.81, 95% CI 0.65–0.99). Cancer associations are particularly strong for lung cancer, especially lung adenocarcinoma66 lung cancer, especially lung adenocarcinoma
OR 1.54 in never-smoking Asian women, higher than European populations
, glioma (P = 1.50 × 10⁻¹⁷), bladder cancer, thyroid cancer, and myeloproliferative neoplasms. Conversely, the A allele (shorter telomeres) is associated with increased risk of idiopathic pulmonary fibrosis77 idiopathic pulmonary fibrosis
first disease association reported for this SNP
(OR 1.82 for A allele), coronary artery disease, and other age-related conditions.

Mental Health and Telomere Biology

Recent research has uncovered connections between rs2736100 and mental health outcomes. A Ugandan study of HIV+ youth88 Ugandan study of HIV+ youth
670 participants aged 5-17 years
found that the GG genotype (equivalent to CC on the plus strand) moderated the relationship between internalizing mental disorders (depression, anxiety, PTSD) and telomere length attrition over 12 months. Among individuals with the GG genotype, those with internalizing disorders showed significantly longer baseline telomeres but accelerated shortening compared to controls — suggesting the variant influences how psychological stress affects cellular aging. A Swedish population study99 Swedish population study
290 individuals with depression history, 273 controls
reported that the rs2736100 minor allele (A, associated with shorter telomeres) was linked to depression diagnosis, but only among those without childhood adversity. This pattern suggests complex gene-environment interactions where the telomere-maintaining effects of different genotypes may interact with early life stress to influence mental health vulnerability.

Practical Implications

The evidence linking rs2736100 to both telomere length and disease risk is strong and replicated across multiple populations, but the clinical utility is nuanced. For CC carriers (longer telomeres), the increased cancer risk — particularly for lung adenocarcinoma, glioma, and myeloproliferative disorders — suggests heightened vigilance for early detection. However, the same genotype may offer protection against cardiovascular disease and pulmonary fibrosis. For AA carriers (shorter telomeres), the inverse applies: lower cancer risk but greater susceptibility to age-related degenerative conditions. AC heterozygotes fall in between, with intermediate telomere length and risk profiles.

From a mental health perspective, individuals carrying the A allele (especially AA homozygotes) may be at higher risk for depression, particularly in the absence of significant childhood trauma. This association appears to be mediated through telomere biology, as psychiatric disorders have been consistently linked1010 psychiatric disorders have been consistently linked
meta-analysis of 14,827 participants from 32 studies
to accelerated telomere attrition. The mechanism likely involves chronic stress-related processes including inflammation, oxidative stress, and dysregulation of the hypothalamic-pituitary-adrenal axis, which cumulatively burden cells and drive telomere shortening.

Interactions

Rs2736100 is one of at least 11 SNPs that collectively influence leukocyte telomere length. It interacts most notably with variants in TERC (telomerase RNA component, rs10936599), which provides the RNA template for telomere synthesis, and variants affecting telomere stability such as OBFC1 rs9420907 and NAF1 rs7675998. A European study of myeloproliferative neoplasms1111 European study of myeloproliferative neoplasms
480 cases, 909 controls
computed a "teloscore" combining these 11 SNPs and found that longer genetically determined telomeres (driven largely by rs2736100-C and OBFC1 rs9420907-C) increased MPN risk with OR 1.82 comparing highest to lowest quintile. The combined effect was greater than rs2736100 alone, suggesting additive or synergistic interactions between telomere-related variants.

For individuals with mental health concerns, the interaction between TERT rs2736100 and TERC rs16847897 warrants attention. The same Ugandan study found both SNPs moderated the depression-telomere relationship, with effects most pronounced in individuals carrying the CC genotype of TERC rs16847897 alongside specific TERT genotypes. While this interaction requires further validation in diverse populations, it suggests that telomerase genetics may partially explain individual differences in how mental health challenges affect biological aging.

Genotype Interpretations

What each possible genotype means for this variant:

AC “Intermediate Telomeres” Intermediate

One copy each of A and C alleles associated with intermediate telomere length and balanced risk profile between cancer and degenerative diseases

The AC genotype represents a middle ground in the telomere-health trade-off. With one copy of each allele, your cells produce intermediate levels of telomerase, maintaining telomeres at a moderate length. This is neither definitively "good" nor "bad" — rather, it positions you in the center of the risk distribution for both cancer and age-related diseases. Meta-analysis data suggests AC heterozygotes have modestly elevated cancer risk compared to AA homozygotes (approximately 1.08-fold) but lower risk than CC carriers (1.16-fold for CC vs 1.00 baseline). Conversely, risk for diseases like idiopathic pulmonary fibrosis or cardiovascular conditions is intermediate as well.

From an evolutionary perspective, the high frequency of heterozygosity at this locus (approximately 50% across populations) may reflect balancing selection: there may be no single "optimal" genotype because the fitness consequences depend on environment, age, and other genetic factors. This is consistent with the "antagonistic pleiotropy" model of aging, where alleles that benefit survival and reproduction early in life (longer telomeres supporting tissue regeneration) may have detrimental effects later (cancer risk).

For mental health, limited evidence suggests AC heterozygotes fall between the two homozygous genotypes in terms of telomere-related depression risk, though this requires further study in diverse populations.

AA “Shorter Telomeres” Decreased Caution

Two copies of the A allele associated with shorter telomeres, lower cancer risk, but increased susceptibility to degenerative diseases and potentially depression

The AA genotype represents a "low telomerase activity" phenotype. Telomeres in your white blood cells are likely shorter than average for your age, reflecting reduced capacity to maintain chromosome ends across cell divisions. This accelerates cellular senescence — the state where cells can no longer divide but remain metabolically active, often secreting inflammatory signals. While this limits cancer development (a major benefit of replicative limits), it also means your tissues may accumulate senescent cells more rapidly, contributing to inflammation and age-related dysfunction.

Evidence for the mental health connection is emerging. A Swedish study found that individuals with the AA genotype (reported as TT in their nomenclature) had shorter salivary telomeres and, among those without childhood adversity, higher rates of depression. A proposed mechanism involves the interaction between genetic predisposition for shorter telomeres and psychological stress: chronic stress accelerates telomere attrition through oxidative damage and inflammation, and individuals starting with shorter telomeres (AA carriers) may reach critical thresholds sooner, potentially triggering cellular aging signatures that affect brain health. However, this association was specific to individuals without early-life trauma, suggesting complex gene-environment interactions.

It's important to note that telomere length is influenced by many factors beyond genetics, including lifestyle, chronic stress, inflammation, and oxidative stress. Your rs2736100 genotype contributes to baseline telomere length, but environmental factors and other genetic variants (particularly in TERC, OBFC1, and other telomere maintenance genes) modulate the ultimate outcome.

CC “Longer Telomeres” Increased Warning

Two copies of the C allele associated with longer telomeres, increased cancer risk (especially lung, glioma, MPN), but lower risk of degenerative diseases

The CC genotype represents a "high telomerase activity" phenotype. Your telomeres are likely longer than average for your age, reflecting enhanced maintenance of chromosome ends. This provides a biological advantage in terms of tissue regeneration, wound healing, and potentially resilience to cellular stress. Longer telomeres may support cardiovascular health by maintaining endothelial function and reducing vascular aging. They may also protect lungs from fibrotic changes, as critically short telomeres in alveolar cells have been implicated in idiopathic pulmonary fibrosis pathogenesis.

However, the cancer risk associated with CC genotype is substantial and well-documented. A meta-analysis of over 108,000 cases found the CC genotype increased overall cancer risk by 39% compared to the AA baseline (OR 1.39, 95% CI 1.26–1.54). Risk is particularly elevated for lung adenocarcinoma, especially in never-smokers and women (OR 1.54 in Asian never-smoking women, with homozygotes showing OR 2.35). The mechanism likely involves providing cancer cells with extended replicative potential: while most cells reach a proliferation limit due to telomere shortening (the "Hayflick limit"), cells that reactivate telomerase or have constitutively longer telomeres can bypass this barrier, allowing malignant transformation to progress further.

The paradox is that longer telomeres, while promoting cancer risk, may actually support mental health and resilience to chronic stress. Studies of depression and telomere length show shorter telomeres in depressed individuals; your CC genotype may offer some buffer. However, the interaction is complex and not yet fully understood, with evidence suggesting effects depend on early life experience and concurrent environmental stressors.

Key References

PMID: 29536006

Meta-analysis showing C allele associates with cancer (OR 1.16) and A allele with non-cancerous diseases (OR 0.81 for C allele protection)

PMID: 23555636

Prospective cohort study linking longer telomeres and rs2736100 G allele with increased lung cancer risk in never-smoking women

PMID: 33407441

TERT rs2736100 moderates association between internalizing mental disorders and accelerated telomere attrition in HIV+ youth

PMID: 26406970

First report linking hTERT genetic variation to mood disorders; rs2736100 minor allele associated with depression without childhood adversity

PMID: 32938804

Genetic polymorphisms including rs2736100 associated with telomere length and MPN risk; longer genetically determined telomeres increase MPN risk (OR 1.82)