rs4148323 — UGT1A1 *6 Gly71Arg
Phase II glucuronidation enzyme that metabolizes bilirubin and many drugs including irinotecan; reduced activity causes Gilbert syndrome and severe chemotherapy toxicity
Details
- Gene
- UGT1A1
- Chromosome
- 2
- Risk allele
- A
- Protein change
- p.Gly71Arg
- Consequence
- Missense
- Inheritance
- Codominant
- Clinical
- Pathogenic
- Evidence
- Established
- Chip coverage
- v3 v4 v5
Population Frequency
Ancestry Frequencies
Tags
Related SNPs
Category
PharmacogenomicsThe Gly71Arg Variant — East Asia's Gilbert Syndrome Mutation
UGT1A1 (UDP-glucuronosyltransferase 1A1) is a Phase II detoxification enzyme
responsible for glucuronidation11 glucuronidation
the addition of a glucuronic acid molecule
to make substances more water-soluble for excretion.
Its primary job is metabolizing bilirubin, the yellow breakdown product of red
blood cells, but it also processes many pharmaceutical drugs including the
chemotherapy agent irinotecan, HIV protease inhibitors, and statins.
The rs4148323 variant (c.211G>A) causes a glycine-to-arginine substitution at
position 71 of the protein (p.Gly71Arg). This amino acid change, designated
UGT1A1*622 UGT1A1*6
the star-allele nomenclature used in pharmacogenomics,
reduces enzyme activity by approximately 50% in vitro33 50% in vitro
measured by bilirubin
glucuronidation clearance assays.
The Mechanism
Glycine at position 71 sits near the enzyme's active site. Replacing this small,
flexible amino acid with arginine (which is larger and positively charged) appears
to reduce the enzyme's maximum reaction rate (Vmax)44 reduce the enzyme's maximum reaction rate (Vmax)
the parameter that reflects
how much substrate the enzyme can process when saturated
without substantially affecting substrate binding affinity. The result: the enzyme
works more slowly, causing substrates like bilirubin and certain drugs to
accumulate in the bloodstream.
This variant is functionally similar to the more widely known UGT1A1*28 (a TA
repeat polymorphism in the promoter), but *6 predominates in East Asian populations55 East Asian populations
allele frequency ~16% in East Asians vs <1% in Europeans
while *28 is more common in Europeans and Africans.
The Evidence
Gilbert Syndrome: Homozygosity for UGT1A1*6 (AA genotype) is the primary
cause of Gilbert syndrome in East Asian populations. A study of 120 Chinese
patients with Gilbert syndrome66 A study of 120 Chinese
patients with Gilbert syndrome
Wang et al. Gene, 2021
found that compound heterozygous *28/*6 (20.83%), homozygous *28 (20.00%),
and heterozygous *6 (15.00%) were the most frequent genotypes. Gilbert syndrome
causes mild unconjugated hyperbilirubinemia (elevated bilirubin), typically
manifesting as yellowing of the eyes (scleral icterus) during fasting, illness,
or stress. It is benign and requires no treatment.
Neonatal Hyperbilirubinemia: Meta-analysis of 32 studies with 6,520 participants77 Meta-analysis of 32 studies with 6,520 participants
Wang et al. Med Sci Monit, 2015
confirmed that UGT1A1 Gly71Arg significantly increases the risk of neonatal
jaundice in both Asian and Caucasian infants. The A allele confers an odds
ratio of approximately 9.8 for homozygotes and 3.2 for heterozygotes. Breastfed
infants with the AA genotype are at particularly high risk and may require
phototherapy.
Irinotecan Toxicity: Irinotecan is a topoisomerase inhibitor used in
colorectal and other cancers. The drug is converted to its active metabolite
SN-38, which is then glucuronidated by UGT1A1 for elimination. Patients with
reduced UGT1A1 activity accumulate toxic levels of SN-38, causing severe
neutropenia88 neutropenia
dangerously low white blood cell counts
and diarrhea99 diarrhea
from damage to rapidly dividing gut cells.
A Korean study1010 A Korean study
Cho et al. Pharmacogenet Genomics, 2015
found that *6/*6 homozygotes had a 7.4-fold increased risk (95% CI 1.2–44.2)
of grade 4 neutropenia. The Dutch Pharmacogenetics Working Group (DPWG)1111 Dutch Pharmacogenetics Working Group (DPWG)
clinical guideline with Level 1 evidence
recommends a 70% starting dose of irinotecan for poor metabolizers (homozygous
*6 or *28, or compound heterozygotes).
Combined Genetic Risk: The combination of UGT1A1*6 and variants in SLCO1B1
(which encodes a transporter that moves drugs into liver cells for metabolism)
creates synergistic toxicity risk1212 synergistic toxicity risk
additive effects beyond either variant alone.
A case report documented life-threatening toxicities in a patient with both
UGT1A1*6/*28 and SLCO1B1*15/*15 genotypes, resulting from extensive accumulation
of SN-38 due to low metabolic and transport capacity.
Atorvastatin Metabolism: A study of 1,079 Chinese patients with coronary
artery disease1313 A study of 1,079 Chinese patients with coronary
artery disease
Su et al. Front Pharmacol, 2021
followed for 5 years found that the rs4148323 A allele was associated with
increased formation of 2-hydroxy atorvastatin (an active metabolite) and a
1.77-fold higher risk of death (HR 1.774, 95% CI 1.031–3.052, p=0.020). The
mechanism is unclear but may involve altered drug metabolism kinetics or tissue
distribution of atorvastatin metabolites.
Atazanavir and Other HIV Drugs: Atazanavir (an HIV protease inhibitor)
inhibits UGT1A1, causing predictable unconjugated hyperbilirubinemia1414 unconjugated hyperbilirubinemia
elevated
bilirubin without liver damage.
Patients who are poor metabolizers (homozygous for *6 or *28) are most likely
to experience jaundice from atazanavir. CPIC guidelines1515 CPIC guidelines
Level A recommendation
suggest considering alternative antiretroviral therapy for known poor metabolizers.
Practical Actions
For Gilbert Syndrome (AA genotype): No treatment is needed. Bilirubin levels
typically range from 20–80 μmol/L (vs normal <20 μmol/L). The mild elevation
is cosmetic (yellowing of eyes) and may even be protective1616 may even be protective
higher bilirubin
is an antioxidant and associated with lower cardiovascular risk,
though this remains controversial. Avoid fasting and stay hydrated during illness
to minimize bilirubin spikes.
For Irinotecan Chemotherapy: If you have cancer and are prescribed irinotecan, request UGT1A1 genotyping before starting treatment. If you're a known poor metabolizer (AA genotype, or compound heterozygote with *28), your oncologist should reduce the starting dose by 30% and monitor closely for neutropenia and diarrhea. Some centers use 70% of standard dose initially, with escalation if tolerated.
For Atazanavir: If prescribed atazanavir for HIV, expect mild jaundice (yellowing of eyes) if you carry the A allele. This is harmless but cosmetically noticeable. If jaundice is severe or bothersome, alternative protease inhibitors (like darunavir) that don't inhibit UGT1A1 are available.
For Statins: The clinical significance of the atorvastatin-mortality association from one Chinese study is uncertain and not replicated. However, if you're East Asian ancestry with the AA genotype and taking atorvastatin, ensure regular lipid and liver function monitoring. Other statins metabolized by different pathways (rosuvastatin, pravastatin) may be alternatives if concerns arise.
For Neonates: If you're pregnant and have the AA genotype (or family history of Gilbert syndrome or neonatal jaundice), inform your obstetrician. Plan for early and frequent bilirubin monitoring after birth, especially if breastfeeding. Most cases resolve with phototherapy; kernicterus (brain damage from severe jaundice) is extremely rare in developed countries with newborn screening.
Interactions
UGT1A1*28 Compound Heterozygosity: The combination of *6 and *28 (one copy
of each) produces an additive reduction in enzyme activity similar to being
homozygous for either variant alone. Chinese Gilbert syndrome patients1717 Chinese Gilbert syndrome patients
Wang
et al. 2021 showed that compound
*6/*28 heterozygotes (20.83% of cases) had elevated bilirubin comparable to
*28/*28 homozygotes. For irinotecan dosing, compound heterozygotes should be
treated as poor metabolizers with dose reduction.
SLCO1B1 (rs4149056, OATP1B1*5): This transporter gene variant reduces hepatic
uptake of drugs including irinotecan and statins. The combination of UGT1A1*6
(reduced metabolism) and SLCO1B1*5 (reduced liver uptake) creates synergistic
toxicity risk1818 synergistic
toxicity risk
the case report of life-threatening irinotecan toxicity
with combined UGT1A1*6/*28 and SLCO1B1*15/*15 genotypes demonstrates the danger.
If you have both variants, irinotecan dose should be reduced even further (possibly
to 50% of standard dose) with intensive monitoring.
CYP2D6 and Other Phase I Enzymes: Some prodrugs require CYP450 enzymes for activation before UGT1A1 glucuronidation. Interactions are drug-specific but generally, having reduced activity in both Phase I (CYP450) and Phase II (UGT1A1) pathways can either prolong active drug exposure (if CYP activates) or provide partial compensation (if CYP inactivates). Discuss polypharmacy with a clinical pharmacist if you're on multiple medications.
Rifampin and Other UGT1A1 Inducers: Rifampin (an antibiotic) induces UGT1A1 expression, potentially compensating for reduced *6 enzyme activity. Conversely, discontinuing rifampin after chronic use can unmask Gilbert syndrome. Other inducers include phenobarbital, carbamazepine, and St. John's Wort.
Drug Interactions
Genotype Interpretations
What each possible genotype means for this variant:
Normal UGT1A1 enzyme activity for bilirubin and drug metabolism
You have two copies of the normal glycine-71 version of the UGT1A1 enzyme. Your enzyme functions at full capacity, efficiently glucuronidating bilirubin and drugs. This is the most common genotype worldwide, found in approximately 82% of people globally (though frequency varies by ancestry — 99.4% of Europeans, 69.7% of East Asians, 99.9% of Africans).
Mildly reduced UGT1A1 activity with one functional and one reduced-activity copy
Heterozygosity for UGT1A1*6 is generally benign for bilirubin metabolism. Most AG individuals have normal or borderline-high bilirubin levels (15-25 μmol/L). The clinical significance emerges with drug exposures, particularly irinotecan chemotherapy. Studies show heterozygotes have intermediate risk of severe toxicity — higher than GG but lower than AA. The Dutch DPWG and CPIC guidelines do not currently recommend dose adjustments for heterozygotes, but some oncologists use 85-90% of standard irinotecan dose with close monitoring.
Significantly reduced UGT1A1 activity causing Gilbert syndrome and high drug toxicity risk
Gilbert syndrome from UGT1A1*6 homozygosity typically manifests in adolescence or early adulthood. Bilirubin levels fluctuate — usually 25-50 μmol/L but can spike to 80-150 μmol/L during fasting, dehydration, illness, or menstruation. The jaundice is purely cosmetic; there is no liver damage, no progression to serious disease, and possibly reduced cardiovascular risk | higher bilirubin has antioxidant properties, though this remains controversial.
The major clinical significance is pharmacogenomics. Irinotecan metabolism is critically dependent on UGT1A1. Poor metabolizers accumulate toxic levels of the active metabolite SN-38, causing life-threatening neutropenia (white blood cell counts <500 cells/μL) and severe diarrhea requiring hospitalization in 30-50% of patients on standard doses. The FDA requires irinotecan labels to mention UGT1A1 testing, and DPWG guidelines (Level 1 evidence) recommend 30% dose reduction for poor metabolizers.
Neonatal hyperbilirubinemia is common if you have children. Meta-analysis shows infants with AA genotype have 9.8-fold increased risk of jaundice requiring phototherapy. Inform your obstetrician if you're pregnant; your baby has a 100% chance of carrying at least one A allele (AG genotype if partner is GG, AA if partner is AG or AA).
Key References
PharmGKB summary establishing UGT1A1 as a very important pharmacogene for drug metabolism
Compound heterozygous UGT1A1*28 and UGT1A1*6 are major genotypes for Gilbert syndrome in Chinese Han people
Meta-analysis of 32 studies confirming UGT1A1 Gly71Arg as risk factor for neonatal hyperbilirubinemia
UGT1A1 rs4148323 A allele associated with increased atorvastatin 2-hydroxy metabolite formation and higher mortality in Chinese CAD patients
Korean colorectal cancer patients with UGT1A1*6/*6 had 7.4-fold increased risk of grade 4 neutropenia from irinotecan
Life-threatening toxicities in patient with combined UGT1A1*6/*28 and SLCO1B1*15/*15 genotypes after irinotecan chemotherapy