|
rs11235972
|
UCP3
|
Intronic UCP3 variant associated with skeletal muscle fat oxidation capacity,...
|
Liver Fat
|
|
Moderate
|
|
rs10515237
|
PCSK1
PCSK1 A/G (rs10515237)
|
Intronic variant in PCSK1 that tags the Q665E-S690T functional haplotype, red...
|
Appetite & Obesity
|
|
Moderate
|
|
rs1064608
|
MTCH2
Pro290Ala
|
Missense variant in MTCH2 that reduces mitochondrial metabolic efficiency, in...
|
Hormones & Sleep
|
|
Moderate
|
|
rs118204015
|
ACADVL
|
Likely-pathogenic VLCAD missense variant abolishing enzyme activity — carrier...
|
Liver Fat
|
|
Strong
|
|
rs115532916
|
ACAD9
ACAD9 Ala326Pro
|
Pathogenic missense variant in acyl-CoA dehydrogenase family member 9, causin...
|
Metabolic Enzymes & Rare Disorders
|
|
Strong
|
|
rs118204017
|
ACADVL
|
ACADVL missense variant (p.Phe458Leu) classified likely pathogenic for VLCAD ...
|
Liver Fat
|
|
Strong
|
|
rs1044498
|
ENPP1
K121Q
|
ENPP1 K121Q variant that increases ENPP1 binding affinity to the insulin rece...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs10838738
|
MTCH2
|
Intronic GWAS obesity variant in MTCH2 — affects mitochondrial energy balance...
|
Appetite & Obesity
|
|
Moderate
|
|
rs104894005
|
GCK
Glu279Ter (MODY2)
|
Pathogenic glucokinase nonsense variant introducing a premature stop codon th...
|
Blood Sugar & Diabetes
|
|
Established
|
|
rs119103258
|
PYGM
|
Pathogenic missense variant in muscle glycogen phosphorylase causing post-tra...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs11037909
|
EXT2
|
Intronic EXT2 variant associated with a modest increase in type 2 diabetes su...
|
Appetite & Obesity
|
|
Moderate
|
|
rs121434280
|
ACADM
ACADM Y67H
|
Pathogenic missense variant in the MCAD enzyme causing a temperature-sensitiv...
|
Metabolic Enzymes & Rare Disorders
|
|
Strong
|
|
rs104894008
|
GCK
Gly261Arg (MODY2)
|
Pathogenic glucokinase missense variant that nearly abolishes enzyme activity...
|
Blood Sugar & Diabetes
|
|
Established
|
|
rs121434281
|
ACADM
S245L
|
Rare pathogenic missense variant in the ACADM gene (p.Ser245Leu) causing medi...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs104894009
|
GCK
Arg191Trp (MODY2)
|
Pathogenic glucokinase missense variant that raises the beta-cell glucose sen...
|
Blood Sugar & Diabetes
|
|
Established
|
|
rs11061946
|
ADIPOR2
|
Intronic variant in the adiponectin receptor 2 gene; rare homozygotes showed ...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs121434282
|
ACADM
Arg281Thr
|
Pathogenic missense variant in the MCAD enzyme causing medium-chain acyl-CoA ...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs121434369
|
GCDH
R402W (Arg402Trp)
|
Most common European allele for glutaric acidemia type 1; complete loss of GC...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs12640088
|
PPARGC1A
|
Intronic variant in PPARGC1A that may modulate PGC-1alpha expression and mito...
|
Fitness & Body
|
|
Emerging
|
|
rs10811661
|
CDKN2B
|
Regulatory variant upstream of CDKN2A/CDKN2B at the 9p21 locus; the T risk al...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs1152003
|
PPARG
|
PPARG 3'-flanking region variant — the G allele independently tags a PPARG re...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs10885406
|
TCF7L2
TCF7L2 Wnt Signaling Depth Variant
|
Intronic TCF7L2 variant tagging the diabetes-risk haplotype and associated wi...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs116862713
|
PRKAB1
|
Rare AMPK beta-1 subunit variant linking central energy sensing to shared mig...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs137852769
|
HADHA
p.Glu510Gln
|
Most common LCHAD deficiency variant; homozygosity causes severe mitochondria...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs10954640
|
ENPP1
ENPP1 3'UTR Variant
|
Intergenic variant near ENPP1-associated regulatory loci; T allele is associa...
|
Blood Sugar & Diabetes
|
|
Emerging
|
|
rs515726176
|
CPT2
|
Rare CPT2 missense variant (p.Arg382Thr) that reduces carnitine palmitoyltran...
|
Liver Fat
|
|
Moderate
|
|
rs1143699
|
PTPRS
PTPRS C/T (rs1143699)
|
Synonymous PTPRS variant associated with increased type 2 diabetes risk in me...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs1175544
|
PPARG
PPARG rs1175544
|
Intronic PPARG variant that accounts for ~7% of individual variation in body ...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs142967670
|
GCDH
R88C
|
Pathogenic missense variant in glutaryl-CoA dehydrogenase; homozygosity cause...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs184660829
|
DENND2C
|
Rare intronic variant near a DENND2C splice site associated with an 8-fold in...
|
Appetite & Obesity
|
|
Moderate
|
|
rs12094543
|
ZMYM4
ZMYM4 rs12094543
|
Intronic variant in ZMYM4, a chromatin-remodeling transcription factor whose ...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs1799958
|
ACADS
G209S (c.625G>A)
|
Common missense variant in ACADS encoding short-chain acyl-CoA dehydrogenase;...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs1943226
|
MC4R
MC4R third tagSNP
|
Upstream regulatory tag variant ~3 kb proximal to MC4R, included in MC4R hapl...
|
Appetite & Obesity
|
|
Emerging
|
|
rs11705701
|
IGF2BP2
IGF2BP2 Insulin Signaling Variant
|
Upstream regulatory variant in IGF2BP2 that shifts mRNA isoform balance in ad...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs12304921
|
SLC11A2
|
Intronic variant in SLC11A2 (DMT1), the primary intestinal iron transporter, ...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs17602729
|
AMPD1
C34T (Q12X)
|
Enzyme critical for energy production during high-intensity exercise; deficie...
|
Fitness & Body
|
|
Strong
|
|
rs11708067
|
ADCY5
ADCY5 Glucose Signaling Variant
|
Intronic regulatory variant that reduces ADCY5 expression in pancreatic islet...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs6536991
|
UCP1
|
Intronic UCP1 variant — the C allele is associated with reduced overweight ri...
|
Liver Fat
|
|
Emerging
|
|
rs12243326
|
TCF7L2
TCF7L2 Incretin Response Depth Variant
|
Intronic TCF7L2 depth variant replicated across multiple populations as a sec...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs200788251
|
ACADVL
ACADVL p.Gly289Arg
|
Pathogenic missense variant in ACADVL encoding VLCAD; heterozygous carriers a...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs13412852
|
LPIN1
|
Intronic variant in LPIN1 (lipin-1) associated with liver fat accumulation an...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs201065226
|
CPT2
p.Arg124Ter (R124X)
|
Rare stop-gain variant in CPT2 abolishing carnitine palmitoyltransferase II, ...
|
Metabolic Enzymes & Rare Disorders
|
|
Strong
|
|
rs2867125
|
TMEM18
TMEM18 regulatory variant (2p25.3)
|
Regulatory variant at the TMEM18 locus on chromosome 2p25.3 — one of the most...
|
Appetite & Obesity
|
|
Strong
|
|
rs12610022
|
INSR
|
Intronic INSR variant that may alter insulin receptor expression or isoform b...
|
Blood Sugar & Diabetes
|
|
Emerging
|
|
rs2034650
|
IVD
|
Intronic regulatory variant in IVD (isovaleryl-CoA dehydrogenase) associated ...
|
Metabolic Enzymes & Rare Disorders
|
|
Emerging
|
|
rs17036314
|
PPARG
|
Intronic PPARG variant — carriers of the C allele have elevated fasting gluco...
|
Fat Storage & Energy
|
|
Moderate
|
|
rs267606898
|
MT-ND5
|
Heteroplasmic missense variant in the mitochondrially encoded ND5 subunit of ...
|
Metabolic Enzymes & Rare Disorders
|
|
Strong
|
|
rs1402837
|
G6PC2
G6PC2 Fasting Glucose Variant
|
Upstream regulatory variant in G6PC2 that modulates pancreatic beta-cell gluc...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs267606993
|
PYGM
PYGM Met1Val (start-loss)
|
Pathogenic start-codon variant in muscle glycogen phosphorylase; homozygous o...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs1571583
|
GLIS3
GLIS3 Beta Cell Development Variant
|
Intronic GLIS3 variant in which the rare A allele modestly elevates TSH, refl...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs6232
|
PCSK1
PCSK1 N221D (Asn221Asp)
|
Missense variant in PCSK1 encoding an Asn221Asp substitution near the Ca-1 ca...
|
Appetite & Obesity
|
|
Strong
|
|
rs6234
|
PCSK1
PCSK1 Q665E (Gln665Glu)
|
Missense variant in PCSK1 that causes a Gln665Glu substitution in the C-termi...
|
Appetite & Obesity
|
|
Strong
|
|
rs377022708
|
ACAD9
Arg532Trp (R532W)
|
Pathogenic missense variant in the ACAD9 complex I assembly factor causing se...
|
Metabolic Enzymes & Rare Disorders
|
|
Strong
|
|
rs6235
|
PCSK1
PCSK1 S690T (Ser690Thr)
|
Missense variant encoding the Ser690Thr substitution in the C-terminal domain...
|
Appetite & Obesity
|
|
Strong
|
|
rs1799999
|
PPP1R3A
Asp905Tyr
|
Missense variant in the skeletal muscle glycogen-targeting subunit of protein...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs2279525
|
PPARGC1A
PPARGC1A 3' UTR metabolic association variant
|
3' UTR variant in the PGC-1alpha gene that may alter PPARGC1A mRNA stability ...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs387906249
|
ACADVL
c.343del (p.Glu115Lysfs*2)
|
Pathogenic ACADVL frameshift deletion causing premature protein truncation; h...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs66791338
|
IVD
5-bp IVD regulatory region indel
|
Intronic 5-bp indel (AAAGG) in the IVD regulatory region that is the primary ...
|
Metabolic Enzymes & Rare Disorders
|
|
Moderate
|
|
rs1801278
|
IRS1
Gly972Arg (G972R)
|
Missense variant in insulin receptor substrate 1 that impairs tyrosine phosph...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs1884613
|
HNF4A
HNF4A P2 Promoter T2D Variant
|
Intronic variant tagging the HNF4A P2 promoter risk haplotype; the G allele s...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs74315294
|
CPT2
p.Ser113Leu (S113L)
|
Missense variant in CPT2 that destabilizes the carnitine palmitoyltransferase...
|
Metabolic Enzymes & Rare Disorders
|
|
Established
|
|
rs2233580
|
PAX4
Arg192His
|
Missense variant that impairs PAX4's ability to repress insulin and glucagon ...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs2959272
|
PPARG
PPARG intronic calorie-restriction trial variant
|
Intronic PPARG variant significantly associated with individual variation in ...
|
Fat Storage & Energy
|
|
Emerging
|
|
rs2237886
|
KCNQ1
KCNQ1 Potassium Channel Diabetes Variant
|
Intronic variant in KCNQ1's imprinted region, tagging the same LD block as es...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs358806
|
WNT5A
|
Regulatory variant near WNT5A linked to type 2 diabetes risk via impaired Wnt...
|
Fat Storage & Energy
|
|
Moderate
|
|
rs8087522
|
MC4R
MC4R A/G (rs8087522)
|
Upstream regulatory variant near MC4R that may create a transcription factor ...
|
Appetite & Obesity
|
|
Emerging
|
|
rs3734254
|
PPARD
T+294C
|
PPARD 3'UTR variant that reduces fatty acid oxidation capacity and blunts the...
|
Fat Storage & Energy
|
|
Moderate
|
|
rs2295490
|
TRIB3
Q84R
|
TRIB3 pseudokinase missense variant that increases Akt inhibition, impairing ...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs77931234
|
ACADM
c.985A>G (p.Lys329Glu)
|
Pathogenic missense variant in ACADM reducing MCAD enzyme activity, predispos...
|
Cardiomyopathy & Structural Heart
|
|
Established
|
|
rs397514580
|
GCK
GCK MODY2 E339K
|
Pathogenic glucokinase missense variant causing maturity-onset diabetes of th...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs4607517
|
GCK
GCK fasting glucose GWAS variant
|
Common intronic variant near glucokinase that raises fasting glucose by impai...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs6981587
|
ANK1
ANK1 small-ankyrin T2D locus variant
|
Intronic ANK1 variant at the NKX6-3/ANK1 type 2 diabetes locus; the T allele ...
|
Fat Storage & Energy
|
|
Moderate
|
|
rs4812829
|
HNF4A
HNF4A Intronic T2D Risk Variant
|
Common intronic variant in HNF4A associated with modestly elevated type 2 dia...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs6017340
|
HNF4A
HNF4A Regulatory Variant
|
Intronic HNF4A tag SNP associated with altered bile acid synthesis regulation...
|
Blood Sugar & Diabetes
|
|
Emerging
|
|
rs6031551
|
HNF4A
HNF4A Regulatory Variant
|
Intronic variant 80 bp from rs6031552 within the HNF4A P2 promoter haplotype ...
|
Blood Sugar & Diabetes
|
|
Emerging
|
|
rs6031552
|
HNF4A
HNF4A Regulatory Variant
|
Intronic variant tagging the HNF4A P2 promoter haplotype; carriers have modes...
|
Blood Sugar & Diabetes
|
|
Moderate
|
|
rs56051278
|
GPD2
|
Intronic variant in GPD2 (mitochondrial glycerol-3-phosphate dehydrogenase), ...
|
Neurology & Cognition
|
|
Strong
|
|
rs7202877
|
CTRB1
|
Intergenic variant near CTRB1/CTRB2 that regulates chymotrypsinogen expressio...
|
Blood Sugar & Diabetes
|
|
Strong
|
|
rs914458
|
PTPN1
PTPN1 downstream variant
|
Downstream regulatory variant 10 kb 3' of PTPN1 (PTP1B) associated with type ...
|
Blood Sugar & Diabetes
|
|
Emerging
|